BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0151400 Os01g0151400|AK120703
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29210.1 | chr4:14400990-14403319 FORWARD LENGTH=638 367 e-102
AT4G39650.1 | chr4:18403602-18405914 FORWARD LENGTH=579 301 3e-82
AT4G39640.1 | chr4:18400608-18402861 FORWARD LENGTH=573 291 6e-79
AT1G69820.1 | chr1:26283312-26284134 REVERSE LENGTH=192 61 1e-09
>AT4G29210.1 | chr4:14400990-14403319 FORWARD LENGTH=638
Length = 637
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 171/297 (57%), Positives = 217/297 (73%), Gaps = 1/297 (0%)
Query: 121 HPMSSGVGGGAFIVTRDAASGDAVAFDARETAPAAATPDMYAGNPTSKYKGALAMGVPGE 180
+PMSSG+GGG+F++ A AFD RETAP AA+ DMY + ++K GAL+MGVPGE
Sbjct: 119 NPMSSGIGGGSFLIVSSQKDSKAEAFDMRETAPLAASKDMYKNDASAKSLGALSMGVPGE 178
Query: 181 LAGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVVPPVAGALKEAERDVLADPGLRAVFAP 240
+AGL+ AW RYGRLPWK LF PAIKLARDGF V P + A+ +L DPG+R+VF+
Sbjct: 179 IAGLYEAWKRYGRLPWKPLFEPAIKLARDGFVVYPYLGKAISTKVAMILKDPGMRSVFSR 238
Query: 241 QGRILAAGEVCRNPALADTLEAVASGGVEAFYGGAIGERFVADVRRAGGIATVDDLRAYK 300
G++L GE C NP LA +LE ++ G AFY G +GE+ V DV++AGGI T+DDLR+YK
Sbjct: 239 NGQVLKTGETCYNPELAQSLETISEQGPGAFYNGTVGEKLVKDVKKAGGIITMDDLRSYK 298
Query: 301 VEVSDAMRADAMGYTFLGMPPPSSGTVGMALVLNILDGYKSLEFLKG-FLGVHRFIEALK 359
V V+DAM D MGYT GMPPPS GTVG ++V+NILD Y +L G LG+HR IEA+K
Sbjct: 299 VRVTDAMSVDVMGYTVHGMPPPSGGTVGFSMVMNILDSYSNLYTASGRELGLHRLIEAMK 358
Query: 360 HMLAIRMALGDPDYVNVAGNVSQMLSPAFADKIRQRIVDNTTFPPSYYFPKWSQLND 416
HM A RM LGDP++VNV +++QMLS A A++I++RI DNTTFPP YY +WSQL D
Sbjct: 359 HMFAARMDLGDPEFVNVTNSMNQMLSKAHAEEIQKRIFDNTTFPPEYYMNRWSQLRD 415
>AT4G39650.1 | chr4:18403602-18405914 FORWARD LENGTH=579
Length = 578
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/296 (49%), Positives = 195/296 (65%), Gaps = 2/296 (0%)
Query: 122 PMSSGVGGGAFIVTRDAASGDAVAFDARETAPAAATPDMYAGNPTSKYKGALAMGVPGEL 181
P SSG+GGGAF + + A+G VA+D+RETAP +AT DMY NP K KG+L++GVPGE+
Sbjct: 77 PASSGIGGGAFTMIK-LANGTEVAYDSRETAPLSATEDMYGDNPERKKKGSLSVGVPGEV 135
Query: 182 AGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVVPPVAGALKEAERDVLADPGLRAVFAPQ 241
AGL+ AW+++G+LPWK L PA KLA +GF + + + D+LAD GL +F
Sbjct: 136 AGLYTAWTQHGKLPWKQLVEPAEKLAAEGFKISKYLYMQMNATRSDILADKGLSELFVSN 195
Query: 242 GRILAAGEVCRNPALADTLEAVASGGVEAFYGGAIGERFVADVRRAGGIATVDDLRAYKV 301
G + G +CRNP LADTL +A G +AFY G +G V+D+++AGGI T+ DL+ Y V
Sbjct: 196 GELKKPGAICRNPKLADTLSQIAEYGPKAFYNGTVGFNLVSDIQKAGGIITLKDLQNYNV 255
Query: 302 EVSDAMRADAMGYTFLGMPPPSSGTVGMALVLNILDGYKSLEFLKGFLGVHRFIEALKHM 361
+V + + + +GY LGMPPPSSG M L+LNIL Y + G LGVHR +EALKH
Sbjct: 256 KVKEPLSTEILGYRLLGMPPPSSGGPAMMLILNILAQYGIPSGVSGPLGVHRLVEALKHA 315
Query: 362 LAIRMALGDPDYV-NVAGNVSQMLSPAFADKIRQRIVDNTTFPPSYYFPKWSQLND 416
A+RM LGDPD+V V V+ MLSP FA ++ +I D TF P YY KW Q+ D
Sbjct: 316 FAVRMNLGDPDFVPEVTNVVADMLSPKFAQDLKSKINDEKTFDPKYYGGKWGQIKD 371
>AT4G39640.1 | chr4:18400608-18402861 FORWARD LENGTH=573
Length = 572
Score = 291 bits (744), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 191/295 (64%), Gaps = 2/295 (0%)
Query: 122 PMSSGVGGGAFIVTRDAASGDAVAFDARETAPAAATPDMYAGNPTSKYKGALAMGVPGEL 181
P SSG+GGGAF V + A G +A+D+RETAP AT +MY GN K KGAL++GVPGE+
Sbjct: 73 PASSGIGGGAFTVVK-IAGGKEIAYDSRETAPLRATENMYGGNVDLKKKGALSVGVPGEV 131
Query: 182 AGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVVPPVAGALKEAERDVLADPGLRAVFAPQ 241
AGL AW ++G+LPWK L PA KLA +GF + + + D+LAD GL +F
Sbjct: 132 AGLFTAWKQHGKLPWKRLVTPAEKLA-EGFKISKYLYMQMNATRSDILADKGLSDLFVSN 190
Query: 242 GRILAAGEVCRNPALADTLEAVASGGVEAFYGGAIGERFVADVRRAGGIATVDDLRAYKV 301
G + G +C NP LA TL+ + G +AFY G +G D++++GGI T+ DL++Y+V
Sbjct: 191 GELKKPGTICHNPKLALTLKLIGEYGPKAFYNGTVGVNLARDIKKSGGIITLKDLQSYRV 250
Query: 302 EVSDAMRADAMGYTFLGMPPPSSGTVGMALVLNILDGYKSLEFLKGFLGVHRFIEALKHM 361
++ + + AD +GY LGMPPPSSG M LVLNIL Y + G LGVHR IEALKH
Sbjct: 251 KIKEPLSADILGYRVLGMPPPSSGGAAMMLVLNILSQYGIPSGVSGPLGVHRLIEALKHA 310
Query: 362 LAIRMALGDPDYVNVAGNVSQMLSPAFADKIRQRIVDNTTFPPSYYFPKWSQLND 416
A+RM LGDPD+ +V VS MLSP FA ++ +I D TF P YY W+Q++D
Sbjct: 311 FAVRMNLGDPDFTDVTKVVSDMLSPKFAKDLKSKINDQKTFDPKYYGGMWNQIDD 365
>AT1G69820.1 | chr1:26283312-26284134 REVERSE LENGTH=192
Length = 191
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 366 MALGDPDYVNVAGNVSQMLSPAFADKIRQRIVDNTTFPPSYYFPKWSQLND 416
M LGDPD+V+V+ +S MLS FA ++++I DN TF P+YY +W Q+ND
Sbjct: 1 MNLGDPDFVDVSKVISDMLSTNFAQGLKKKINDNKTFDPNYYGGRWDQIND 51
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,220,100
Number of extensions: 277452
Number of successful extensions: 603
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)