Os01g0148000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0148000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.01 | 0.215 | 13.3 | 1.09 | 0.422 | -0.376 | -0.221 | 1.63 | 0.433 | 23.7 | 20.29 | 1615 | -- | -- |
| 22.06 | 0.219 | 13.4 | 0.858 | 0.446 | -0.483 | -0.33 | -- | 0.422 | 23.9 | 13.87 | 17280 | -- | -- |
| 21.22 | 0.215 | 13.3 | 1.09 | 0.423 | -0.376 | -- | 1.61 | 0.432 | 23.7 | 20.25 | 1617 | -- | -- |
| 22.04 | 0.219 | 13.4 | 0.89 | 0.427 | -0.498 | -- | -- | 0.441 | 23.8 | 10.41 | 17257 | -- | -- |
| 26.72 | 0.242 | 13.3 | 0.859 | -- | -0.675 | -- | 1.31 | 0.4 | -- | 20.25 | 1617 | -- | -- |
| 25.82 | 0.238 | 13.4 | 0.499 | 0.416 | -- | -0.217 | -- | 0.231 | 23.8 | -- | -- | -- | -- |
| 26.03 | 0.239 | 13.4 | 0.507 | 0.417 | -- | -- | -- | 0.232 | 23.8 | -- | -- | -- | -- |
| 28.05 | 0.248 | 13.4 | 0.663 | -- | -0.786 | -- | -- | 0.342 | -- | 9.389 | 14613 | -- | -- |
| 30.71 | 0.258 | 13.4 | -- | 0.415 | 0.222 | -- | -- | 0.101 | 23.8 | 18.26 | 47520 | -- | -- |
| 36.96 | 0.284 | 13.4 | 0.52 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 32.81 | 0.268 | 13.4 | -- | 0.423 | -- | -- | -- | 0.176 | 23.9 | -- | -- | -- | -- |
| 38.81 | 0.291 | 13.4 | -- | -- | -0.483 | -- | -- | 0.246 | -- | 18.86 | 47520 | -- | -- |
| 44.09 | 0.31 | 13.4 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.17 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 2 | 20.18 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 5 | 20.19 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 6 | 20.19 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 19 | 20.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 20 | 20.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 22 | 20.21 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 26 | 20.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 27 | 20.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 28 | 20.22 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 35 | 20.22 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 36 | 20.22 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 58 | 20.23 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 82 | 20.24 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 83 | 20.25 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 107 | 20.25 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 122 | 20.26 | humidity | 60.0 | 43200 | > th | dose independent | no | NA | NA |
| 123 | 20.26 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 162 | 20.27 | humidity | 60.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 182 | 20.27 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 207 | 20.28 | humidity | 60.0 | 43200 | < th | dose independent | no | NA | NA |
| 251 | 20.29 | humidity | 60.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 298 | 20.30 | humidity | 60.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 299 | 20.30 | humidity | 60.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 417 | 20.33 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 420 | 20.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 493 | 20.37 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 511 | 20.38 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 548 | 20.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 550 | 20.40 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 566 | 20.40 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 587 | 20.41 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 598 | 20.42 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 602 | 20.42 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 607 | 20.43 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 626 | 20.44 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 689 | 20.46 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 714 | 20.47 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 19 | NA |
| 718 | 20.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 728 | 20.48 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 784 | 20.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 796 | 20.49 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 799 | 20.49 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 800 | 20.49 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 824 | 20.49 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 847 | 20.50 | radiation | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 853 | 20.50 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 875 | 20.50 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 882 | 20.50 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 925 | 20.51 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 954 | 20.51 | wind | 9.0 | 14400 | > th | dose dependent | sin | 6 | NA |