BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0148000 Os01g0148000|003-130-H05
         (186 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02310.1  | chr5:474279-482552 FORWARD LENGTH=2007             102   1e-22

>AT5G02310.1 | chr5:474279-482552 FORWARD LENGTH=2007
          Length = 2006

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 2/143 (1%)

Query: 9    EYFVSKHIDPSCHPKDMVRRLTYPYLRRCALLWELLRSSSSAPLYDSSNIWEGSSHLYLN 68
            EYF S ++D SC  KD +R+ + P+LRRCALLW+LL+S+    L++ S++++  S    +
Sbjct: 1736 EYFRSNNMDLSCDIKDTIRKYSLPFLRRCALLWKLLKSTPRK-LHEESDMFDLPSDPTTD 1794

Query: 69   N-SAADSLAVELNGIRELEDLFQIQSLDPILQDESVHMLALKWTQHFCEDYKTRKYRGVH 127
            N     S   ELN ++ELE +F I  +D IL DE +      W QHF  +Y+  + +   
Sbjct: 1795 NMDFIYSPQSELNHVQELEKMFNIPPIDIILNDELLRSSTQIWLQHFQREYRVNRVKRSL 1854

Query: 128  FSTPAVPFRLMELPPVYQVLLER 150
              TP VPF+LM+LP +YQ LL+R
Sbjct: 1855 CITPVVPFQLMKLPNLYQDLLQR 1877



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,138,123
Number of extensions: 159054
Number of successful extensions: 460
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)