Os01g0143300 - FiT-DB

Os01g0143300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycine-rich protein (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	11.3	(0.0256)	R²	:	0.856
β₁	:	0.959	(0.0954)	R²_dD	:	0.0317	R²_D	:	0.042
β₂	:	3.25	(0.0654)	R²_dC	:	0.814	R²_C	:	0.707
β₃	:	-1.84	(0.108)	R²_dE	:	0.0984	R²_E	:	0.0202
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0339	(0.0555)	R²_dN8	:	1.11e-05	R²_N8	:	-0.000634
σ	:	0.478
deviance	:	105.3
__

_____

C
peak time of C	:	15.6
E
wheather	:	temperature
threshold	:	31.16
memory length	:	176
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.39
open length of G	:	17

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
103.9	0.479	11.3	1.01	3.18	-1.75	0.747	-0.911	0.0166	15.8	30.27	126	3.66	17.4
105.13	0.478	11.3	0.957	3.18	-1.71	0.476	--	-0.000868	15.8	30.55	126	3.55	17.7
104.94	0.477	11.3	1.02	3.22	-1.82	--	-0.685	0.0271	15.6	30.8	151	3.38	17.3
105.3	0.478	11.3	0.959	3.25	-1.84	--	--	0.0339	15.6	31.16	176	3.39	17
397.32	0.928	11.3	0.467	--	-4.22	--	-1.75	-0.461	--	32.72	151	2.71	24
151.8	0.578	11.3	1.21	3.18	--	1.15	--	0.169	16.3	--	--	--	--
155.49	0.584	11.3	1.23	3.18	--	--	--	0.175	16.3	--	--	--	--
400.54	0.932	11.4	0.205	--	-4.56	--	--	-0.506	--	49.42	151	3.82	24
124.58	0.52	11.3	--	3.19	-2.14	--	--	-0.152	15.6	30.95	207	2.95	18.4
701.79	1.24	11.2	1.1	--	--	--	--	0.0906	--	--	--	--	--
195.04	0.653	11.3	--	3.16	--	--	--	0.0387	16.3	--	--	--	--
400.95	0.933	11.4	--	--	-4.37	--	--	-0.552	--	33.17	151	0.364	24
733.6	1.26	11.3	--	--	--	--	--	-0.0312	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	105.48	temperature	30	90	< th	dose dependent	rect.	4	17
3	106.19	temperature	10	270	> th	dose dependent	rect.	6	21
4	106.21	temperature	30	270	< th	dose dependent	rect.	2	18
5	106.35	temperature	15	90	> th	dose dependent	rect.	8	20
6	106.36	temperature	30	90	< th	dose dependent	rect.	4	19
22	108.34	temperature	30	10	< th	dose dependent	rect.	5	17
26	108.78	temperature	15	10	> th	dose dependent	rect.	8	21
32	108.96	temperature	30	10	< th	dose dependent	rect.	5	15
110	113.61	temperature	30	90	< th	dose dependent	sin	1	NA
113	113.74	temperature	20	10	> th	dose dependent	rect.	8	14
162	115.25	temperature	10	90	> th	dose dependent	sin	2	NA
221	116.44	temperature	30	10	< th	dose dependent	rect.	5	11
413	119.55	temperature	10	270	> th	dose dependent	rect.	22	13
436	119.86	temperature	30	10	< th	dose dependent	rect.	5	9
451	120.12	temperature	25	270	< th	dose independent	rect.	2	18
457	120.19	temperature	25	90	< th	dose independent	rect.	5	17
520	120.74	temperature	25	90	< th	dose independent	rect.	4	19
525	120.75	temperature	25	90	> th	dose dependent	rect.	16	23
631	121.58	temperature	10	270	> th	dose dependent	rect.	16	23
667	121.90	temperature	30	10	< th	dose dependent	rect.	5	7
695	122.13	temperature	30	90	< th	dose dependent	rect.	11	22
706	122.23	temperature	20	90	> th	dose dependent	rect.	23	23
709	122.26	temperature	10	720	> th	dose dependent	rect.	7	4
711	122.29	temperature	20	90	> th	dose dependent	no	NA	NA
720	122.32	humidity	70	90	> th	dose independent	rect.	4	16
730	122.36	temperature	25	30	> th	dose dependent	rect.	3	22
775	122.52	temperature	25	90	> th	dose dependent	rect.	18	23
779	122.54	temperature	20	720	> th	dose dependent	rect.	8	2
833	122.71	temperature	30	90	< th	dose dependent	rect.	9	23
835	122.73	humidity	70	90	> th	dose independent	rect.	4	19
888	122.92	humidity	60	90	> th	dose dependent	rect.	5	15