BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0143300 Os01g0143300|AK108438
(264 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05990.1 | chr5:1806911-1807895 REVERSE LENGTH=260 197 4e-51
AT3G55605.1 | chr3:20622668-20623889 FORWARD LENGTH=259 196 8e-51
AT2G39795.1 | chr2:16597026-16598028 FORWARD LENGTH=251 179 1e-45
AT5G02050.1 | chr5:403239-404244 REVERSE LENGTH=268 156 1e-38
AT2G39790.1 | chr2:16594833-16595800 FORWARD LENGTH=241 110 9e-25
AT1G15870.1 | chr1:5457153-5458245 FORWARD LENGTH=243 86 2e-17
AT1G80720.1 | chr1:30336289-30337347 FORWARD LENGTH=191 84 6e-17
AT4G31930.1 | chr4:15449710-15450804 REVERSE LENGTH=235 75 3e-14
AT4G32605.1 | chr4:15726429-15727864 REVERSE LENGTH=228 72 3e-13
>AT5G05990.1 | chr5:1806911-1807895 REVERSE LENGTH=260
Length = 259
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 140/216 (64%), Gaps = 4/216 (1%)
Query: 50 SMPFSSAPSTRPSSDGELLRIIDAEIKFAEESDDHDRVEEIPDNFPFKISDEKGFNSITL 109
++PF+++ R S LLRII+ EI +AE++DD+ RVEE P FPF++ D+ G +TL
Sbjct: 45 NVPFTTSTKKRASPTDPLLRIIEEEIGYAEKADDYHRVEETPSGFPFEMEDKPGGKIVTL 104
Query: 110 TRTYQGENIEVLVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPK-SSIPLTVTISK 168
TR Y+GE ++V V M +LVTG PK S++PL VT+SK
Sbjct: 105 TREYEGETVKVEVHMTNLVTGDKEDDEDDEEEAENEEDEDEDKPLKPKQSNVPLLVTLSK 164
Query: 169 GEEGPSLEFICTAYPDEILI-DALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLE 227
+ GPSLEF CTA+PD I I D P + +DE+ YEGP F LDE L++AFH+Y+E
Sbjct: 165 -KTGPSLEFRCTAFPDRIAIKDMWVTFPDDPSKDEL-AYEGPSFRVLDEKLRKAFHRYIE 222
Query: 228 MRGITPMATNFLHEYMINKDSREYLIWLRRLKDFVR 263
+RGI P NFLHEYMINKDSRE+L+WL+ LK+FV+
Sbjct: 223 IRGIKPSMINFLHEYMINKDSREHLLWLKSLKNFVK 258
>AT3G55605.1 | chr3:20622668-20623889 FORWARD LENGTH=259
Length = 258
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 144/216 (66%), Gaps = 12/216 (5%)
Query: 51 MPFSSAPSTRP-SSDGELLRIIDAEIKFAEESDDHDRVEEIPD--NFPFKISDEKGFNSI 107
P+S+A T P SD L+++ID+EIK + E+DDHD EE D +FPFKI D G ++
Sbjct: 51 FPYSTA--TEPLKSDQTLIQVIDSEIKDSFEADDHDADEETIDSSDFPFKIEDNPGHRTV 108
Query: 108 TLTRTYQGENIEVLVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKSSIPLTVTIS 167
TLTR Y GE I+V VSMP L +K+ +SSIPL VT++
Sbjct: 109 TLTREYNGEQIKVEVSMPGLAMDENEDDVDDDEDGDGRH------EKSNESSIPLVVTVT 162
Query: 168 KGEEGPSLEFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLE 227
K + G SLEF CTA+PDEI+ID LSV + +E +TY+GPDF +LDEN++++FHK+LE
Sbjct: 163 K-KSGLSLEFSCTAFPDEIVIDGLSVNRPDDSSEEQLTYDGPDFQELDENMRKSFHKFLE 221
Query: 228 MRGITPMATNFLHEYMINKDSREYLIWLRRLKDFVR 263
RGI AT+FL+EYM+ KDSREYL+WL++LK FV+
Sbjct: 222 TRGIKASATDFLYEYMMKKDSREYLLWLKKLKTFVQ 257
>AT2G39795.1 | chr2:16597026-16598028 FORWARD LENGTH=251
Length = 250
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 137/205 (66%), Gaps = 16/205 (7%)
Query: 60 RPSSDGELLRIIDAEIKFAEESDDHDRVEEI-PDNFPFKISDEKGFNSITLTRTYQGENI 118
R SS+ L+R+ID+EI A +SD+ D EE+ P +FPF+I D+ G ++TLTR Y GE+I
Sbjct: 58 RISSEQTLIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIEDKPGNQNVTLTRDYNGEHI 117
Query: 119 EVLVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKSSIPLTVTISKGEEGPSLEFI 178
+V+VSMPSLV+ + +SSIPL VT++K + G +LEF
Sbjct: 118 KVVVSMPSLVSDENDDDDDDDEG------------PSNESSIPLVVTVTK-KSGLTLEFS 164
Query: 179 CTAYPDEILIDALSVM-PSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMATN 237
C A+PDEI IDALSV P +S ED++ EGPDF DLDENL++ F+K+LE+RG+ TN
Sbjct: 165 CMAFPDEIAIDALSVKHPGDSLEDQLAN-EGPDFEDLDENLKKTFYKFLEIRGVKASTTN 223
Query: 238 FLHEYMINKDSREYLIWLRRLKDFV 262
FLHEYM K +REY +WL+ +K+F+
Sbjct: 224 FLHEYMTRKVNREYFLWLKNVKEFM 248
>AT5G02050.1 | chr5:403239-404244 REVERSE LENGTH=268
Length = 267
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 124/207 (59%), Gaps = 9/207 (4%)
Query: 59 TRPSSDGELLRIIDAEIKFA---EESDDHDRVEEIPDNFPFKISDEKGFNSITLTRTYQG 115
++ ++D L+ +I++EI+ A E D D +E+ P+ FPF+I D G ++ LTR ++
Sbjct: 65 SKTTADENLVSVIESEIECAVAEEAPHDTDFLEDKPEGFPFEIIDNSGERTVLLTRKFED 124
Query: 116 ENIEVLVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKSSIPLTVTISKGEEGPSL 175
E I+V V + + K +P+ V++ KG+ G L
Sbjct: 125 ETIQVEVDS----VASYDDEDEEEEAEPNNEEDDEDQESSGKVRVPMVVSVQKGD-GVCL 179
Query: 176 EFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMA 235
EF +AYPDEI+ID+LS+ + G D + YEGPDF+DLDENLQ+AFH+YLE+RGI P
Sbjct: 180 EFGVSAYPDEIVIDSLSIKQPQ-GSDNDLAYEGPDFDDLDENLQKAFHRYLEIRGIKPSF 238
Query: 236 TNFLHEYMINKDSREYLIWLRRLKDFV 262
T FL +Y+ NKDSREYL WL+ LK FV
Sbjct: 239 TTFLADYVANKDSREYLQWLKDLKSFV 265
>AT2G39790.1 | chr2:16594833-16595800 FORWARD LENGTH=241
Length = 240
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 22/202 (10%)
Query: 62 SSDGELLRIIDAEIKFAEESDDHDRVEEI-PDNFPFKISDEKGFNSITLTRTYQGENIEV 120
SS+ L +ID+E+ A ++DD + EE+ P +FP KI D+ G S+TLT Y E I V
Sbjct: 58 SSEQTLHLVIDSELNSALQTDDPNLNEEMAPGSFPLKIRDKPGDQSVTLTAYYNDERIHV 117
Query: 121 LVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKSSIPLTVTISKGEEGPSLEFICT 180
V MP L + S PL VT+ K + G S+EF C
Sbjct: 118 DVGMPYL----------------GDDVIDVFGPNNDELSFPLVVTVIK-KNGVSIEFTCQ 160
Query: 181 AYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMATNFLH 240
AY D I + L+V + +M + P F +LD+NL++AFH+YL R + T LH
Sbjct: 161 AYADYIDLTDLTV---HDYQYQMGETDWPRFKNLDDNLKKAFHRYLATR-LDANITKLLH 216
Query: 241 EYMINKDSREYLIWLRRLKDFV 262
+YM++K REYL+WL+ + FV
Sbjct: 217 KYMVSKIKREYLLWLKNVNKFV 238
>AT1G15870.1 | chr1:5457153-5458245 FORWARD LENGTH=243
Length = 242
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 28/208 (13%)
Query: 60 RPSSDGELLRIIDAEIKFAEESDDHDRVEEIPDNF-PFKISDEKGFNSITLTRTY-QGEN 117
R + +G +LR+I EI + DH + + ++F PF + + G I+L R + + E+
Sbjct: 55 RTAFEGNILRLIRLEI---QSELDHSPILQPEESFGPFTVDERPGEQWISLRRKFGEKED 111
Query: 118 IEVLVSMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKS---SIPLTVTISKGEEGPS 174
I++ +M T P+ I V ISKG+ G +
Sbjct: 112 IKIEATM-----------------FDGSVPSSKSTTSDPEDVQLHITFIVNISKGD-GET 153
Query: 175 LEFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPM 234
LE +C+A+PD I I V +S ++ Y GP+F ++++ LQ + +++LE RGI+
Sbjct: 154 LEIMCSAWPDTIQITKFFV--RKSSQNSPNAYIGPEFQEMEDELQDSVYRFLEERGISDD 211
Query: 235 ATNFLHEYMINKDSREYLIWLRRLKDFV 262
FLH+YM NKD EY+ W+ +K +V
Sbjct: 212 LAEFLHQYMKNKDKAEYIRWMETVKSYV 239
>AT1G80720.1 | chr1:30336289-30337347 FORWARD LENGTH=191
Length = 190
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 65 GELLRIIDAEIKFAEESDDHDRVEEIPDNF-PFKISDEKGFNSITLTRTY-QGENIEVLV 122
G +LR+I EI++ DH + P++F PF + + G I+L R + E+I++
Sbjct: 8 GNILRLIRNEIEY---ELDHSPPLQPPNSFGPFTVDERPGEQWISLKRNFGDKEDIKIEA 64
Query: 123 SMPSLVTGXXXXXXXXXXXXXXXXXXXXXTQKAPKSSIPLT--VTISKGEEGPSLEFICT 180
+M T+ P+ + +T V ISK +LE +C+
Sbjct: 65 TM-----------------FDRSVPTSKSTKTEPEYILHITFIVNISKAGATEALEIMCS 107
Query: 181 AYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMATNFLH 240
A+PD I I L + + +Y GP+F +LD+ LQ A +++LE RGI+ FLH
Sbjct: 108 AWPDTIEISKLCIRRGINTSPS--SYGGPEFEELDDQLQDALYQFLEERGISDELAVFLH 165
Query: 241 EYMINKDSREYLIWLRRLKDFV 262
YM NK EY+ W+ +K +V
Sbjct: 166 RYMKNKGKAEYVRWMESVKSYV 187
>AT4G31930.1 | chr4:15449710-15450804 REVERSE LENGTH=235
Length = 234
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 160 IPLTVTISKGEEGPSLEFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQ 219
I L V ISK + +EF+C+ +P+ I I L + + Y GP+F +L + Q
Sbjct: 132 ISLLVDISKVDGSEEIEFLCSVWPNRIEIRKLYKLRRNKITGQ--PYMGPNFGNLKYDFQ 189
Query: 220 RAFHKYLEMRGITPMATNFLHEYMINKDSREYLIWLRRLKDFV 262
A ++L +RGI FLHEYM+NKD E + WLR+L F+
Sbjct: 190 TAIREFLRVRGIDAELCFFLHEYMMNKDRIELIQWLRKLNSFI 232
>AT4G32605.1 | chr4:15726429-15727864 REVERSE LENGTH=228
Length = 227
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 162 LTVTISKGEEGPSLEFICTAYPDEILIDALSVMPSESG---EDEMITYEGPDFNDLDENL 218
L V +SK + SL F+C YPD + I ++S+ P D+ Y GP F +LDE +
Sbjct: 114 LHVAVSKPNQPDSLHFLCGLYPDALGIHSVSMRPKLEALEMSDDPTQYTGPSFEELDEKM 173
Query: 219 QRAFHKYLEMRGITPMATNFLHEYMINKDSREYLIWLRRLKDFVR 263
+ FH +LE RG+ FL ++ KD R L W + + FV
Sbjct: 174 RDVFHGFLEERGVNESLFPFLQAWLYVKDHRNLLRWFKSVGTFVH 218
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,491,021
Number of extensions: 178710
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 10
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)