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Os01g0142300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, group 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.041) R2 : 0.753
β1 : 0.252 (0.227) R2dD : 0.00154 R2D : -0.0309
β2 : 2.79 (0.098) R2dC : 0.449 R2C : 0.425
β3 : -2.42 (0.176) R2dE : 0.334 R2E : 0.277
β4 : 2.64 (0.45) R2dD*C : 0.0205 R2D*C : 0.0225
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0402 (0.108) R2dN8 : 3.56e-05 R2N8 : 0.00285
σ : 0.701
deviance : 226.85
__
_____
C
peak time of C : 5.91
E
wheather : temperature
threshold : 21.1
memory length : 24189
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.13 0.708 12.6 0.237 2.8 -2.35 2.77 0.678 0.00612 5.9 21.2 21316 -- --
226.85 0.701 12.7 0.252 2.79 -2.42 2.64 -- -0.0402 5.91 21.1 24189 -- --
245.59 0.73 12.6 0.274 2.8 -2.38 -- 0.521 -0.0119 5.94 21.1 21416 -- --
245.48 0.73 12.7 0.249 2.81 -2.41 -- -- -9.67e-05 5.97 21.2 24235 -- --
656.31 1.19 12.6 0.211 -- -2.26 -- 0.95 0.044 -- 21.31 22103 -- --
329.29 0.851 12.9 -2.25 2.79 -- 2.73 -- -1.02 5.99 -- -- -- --
347.11 0.872 12.9 -2.22 2.81 -- -- -- -1.03 6.1 -- -- -- --
657.22 1.19 12.7 0.367 -- -2.59 -- -- 0.0882 -- 21.01 20867 -- --
246.48 0.731 12.7 -- 2.84 -2.41 -- -- -0.0405 6.04 21.16 21426 -- --
755.18 1.28 12.9 -2.14 -- -- -- -- -0.965 -- -- -- -- --
477.52 1.02 12.8 -- 2.77 -- -- -- -0.78 6.14 -- -- -- --
656.92 1.19 12.7 -- -- -2.27 -- -- -0.0682 -- 21.2 22110 -- --
876.49 1.38 12.9 -- -- -- -- -- -0.727 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.18 precipitation 0.1 43200 < th dose independent rect. 6 1
2 225.18 precipitation 0.1 43200 < th dose dependent rect. 6 1
3 225.56 precipitation 0.1 43200 > th dose independent rect. 6 1
4 225.56 precipitation 0.1 43200 > th dose dependent rect. 6 1
5 226.69 radiation 1.0 43200 > th dose independent rect. 10 2
6 226.96 radiation 1.0 43200 < th dose independent rect. 10 2
7 226.96 radiation 1.0 43200 < th dose dependent rect. 10 2
8 227.21 precipitation 0.1 43200 > th dose independent rect. 4 1
9 227.24 precipitation 0.1 43200 < th dose independent rect. 4 1
11 227.24 precipitation 0.1 43200 < th dose dependent rect. 4 1
12 227.44 radiation 10.0 1440 < th dose independent rect. 16 1
15 227.50 humidity 70.0 43200 < th dose dependent rect. 21 11
16 227.51 precipitation 0.1 43200 > th dose dependent rect. 4 2
19 228.08 temperature 20.0 43200 < th dose dependent rect. 22 1
24 228.62 radiation 40.0 4320 < th dose dependent rect. 17 11
32 229.01 radiation 10.0 1440 < th dose independent rect. 16 12
33 229.03 radiation 10.0 1440 < th dose independent rect. 16 10
43 229.31 radiation 1.0 43200 < th dose dependent rect. 6 1
48 229.41 radiation 10.0 1440 < th dose independent rect. 16 7
59 229.59 radiation 10.0 1440 < th dose independent rect. 16 4
91 229.96 temperature 20.0 43200 < th dose dependent rect. 7 1
96 229.99 radiation 40.0 4320 < th dose dependent rect. 17 6
108 230.12 precipitation 0.1 43200 > th dose dependent rect. 4 5
120 230.29 radiation 1.0 43200 < th dose dependent rect. 6 6
132 230.45 temperature 20.0 43200 < th dose dependent sin 16 NA
147 230.53 radiation 40.0 4320 < th dose dependent rect. 17 1
151 230.55 temperature 20.0 43200 < th dose dependent rect. 7 20
153 230.59 precipitation 0.1 43200 < th dose independent rect. 1 5
154 230.59 precipitation 0.1 43200 < th dose dependent rect. 1 5
160 230.63 precipitation 0.1 43200 > th dose independent rect. 1 5
187 230.83 humidity 90.0 43200 > th dose dependent rect. 2 17
190 230.89 radiation 40.0 4320 < th dose dependent rect. 17 4
202 230.98 temperature 20.0 43200 < th dose independent rect. 22 1
208 231.02 precipitation 0.1 43200 > th dose dependent rect. 1 5
228 231.20 temperature 20.0 43200 > th dose independent rect. 22 1
237 231.28 humidity 70.0 43200 < th dose independent rect. 22 10
259 231.45 radiation 1.0 43200 > th dose independent rect. 7 5
265 231.46 temperature 20.0 43200 > th dose independent rect. 15 1
276 231.49 radiation 1.0 43200 < th dose independent rect. 7 5
291 231.52 temperature 25.0 43200 < th dose independent rect. 12 1
301 231.54 temperature 20.0 43200 < th dose dependent rect. 17 19
327 231.57 temperature 20.0 43200 < th dose dependent rect. 14 22
358 231.61 temperature 20.0 43200 < th dose dependent no NA NA
369 231.62 temperature 20.0 43200 < th dose dependent rect. 21 23
391 231.71 temperature 20.0 43200 < th dose dependent rect. 1 23
449 231.96 temperature 20.0 43200 < th dose independent rect. 14 3
453 231.97 temperature 20.0 43200 < th dose independent rect. 15 1
469 232.02 humidity 90.0 43200 > th dose dependent sin 2 NA
470 232.02 radiation 1.0 4320 > th dose dependent rect. 17 1
486 232.12 temperature 20.0 43200 < th dose independent rect. 1 1
494 232.16 temperature 25.0 43200 > th dose independent rect. 12 1
498 232.19 temperature 20.0 43200 > th dose independent rect. 1 1
502 232.21 temperature 20.0 43200 > th dose independent rect. 11 6
503 232.22 temperature 20.0 43200 < th dose independent rect. 11 6
551 232.45 temperature 20.0 43200 < th dose independent rect. 6 1
565 232.49 temperature 20.0 43200 > th dose independent rect. 9 7
594 232.66 temperature 20.0 43200 > th dose independent rect. 6 1
595 232.66 radiation 40.0 43200 > th dose independent rect. 7 1
602 232.66 temperature 20.0 43200 < th dose independent rect. 11 8
612 232.66 radiation 40.0 43200 > th dose dependent rect. 7 1
637 232.72 humidity 90.0 43200 > th dose dependent rect. 4 4
638 232.73 humidity 90.0 43200 > th dose dependent rect. 7 1
640 232.74 temperature 25.0 14400 < th dose independent rect. 10 1
641 232.74 temperature 20.0 43200 < th dose independent rect. 21 10
642 232.74 humidity 60.0 43200 > th dose independent rect. 19 14
657 232.80 temperature 25.0 14400 > th dose independent rect. 10 1
659 232.80 temperature 20.0 43200 < th dose independent rect. 9 11
679 232.87 temperature 20.0 43200 > th dose independent rect. 21 10
716 232.98 humidity 60.0 43200 < th dose independent rect. 19 13
720 232.99 temperature 20.0 43200 < th dose independent rect. 7 13
722 233.00 temperature 20.0 43200 < th dose independent rect. 9 8
755 233.08 temperature 20.0 43200 < th dose independent rect. 7 10
786 233.15 humidity 90.0 43200 > th dose dependent rect. 2 23
798 233.17 radiation 1.0 43200 < th dose dependent rect. 4 10
809 233.19 radiation 1.0 43200 < th dose dependent rect. 22 16
812 233.19 radiation 1.0 43200 < th dose dependent rect. 18 21
861 233.28 temperature 25.0 14400 > th dose independent rect. 8 4
891 233.34 humidity 90.0 43200 > th dose independent rect. 2 17
892 233.34 humidity 90.0 43200 > th dose dependent rect. 11 21
898 233.36 humidity 80.0 43200 > th dose independent rect. 11 1
916 233.40 temperature 20.0 43200 < th dose dependent rect. 6 6
918 233.40 humidity 90.0 43200 > th dose dependent rect. 5 23
931 233.44 humidity 90.0 43200 < th dose independent rect. 10 1
961 233.48 humidity 90.0 43200 > th dose dependent no NA NA
966 233.50 precipitation 0.1 43200 < th dose independent rect. 8 2
970 233.50 precipitation 0.1 43200 < th dose dependent rect. 8 2
979 233.52 temperature 20.0 43200 < th dose independent sin 11 NA
988 233.54 temperature 25.0 14400 < th dose independent rect. 8 4
994 233.55 humidity 90.0 43200 > th dose independent rect. 23 20