BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0142300 Os01g0142300|AK060202
         (436 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01220.1  | chr5:86907-89885 REVERSE LENGTH=511                642   0.0  

>AT5G01220.1 | chr5:86907-89885 REVERSE LENGTH=511
          Length = 510

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/424 (71%), Positives = 355/424 (83%), Gaps = 1/424 (0%)

Query: 9   DEMEEAPPLLLDEA-ARPRRVALFVEPSPFAYISGYKNRFQNFIKHLREMGDEVIVVTNH 67
           DE E   PLL  E+ ++PRR+ALFVEPSPFAY+SGYKNRFQNFI++LREMGDEVIVVT H
Sbjct: 86  DESEIDAPLLDPESLSKPRRIALFVEPSPFAYVSGYKNRFQNFIRYLREMGDEVIVVTTH 145

Query: 68  EGVPQEFHGAKVIGSWSFPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGIMVFGA 127
           EGVP+EF+GA+VIGS SFPCP Y KVPLSLALSPRIISE+A+FKPDIIHASSPG+MVFGA
Sbjct: 146 EGVPEEFYGARVIGSRSFPCPYYQKVPLSLALSPRIISEIARFKPDIIHASSPGVMVFGA 205

Query: 128 LAIAKLLGVPLVMSYHTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVAISKDF 187
           LAIAK+L VP+VMSYHTHVPVYIPRYTFSWLV+PMW +IRFLHRAADLTLVPS AI KD 
Sbjct: 206 LAIAKMLSVPIVMSYHTHVPVYIPRYTFSWLVKPMWSIIRFLHRAADLTLVPSAAIGKDL 265

Query: 188 ETAHVISANRIRLWNKGVDSASFHPKFRSHEMRVRLSDGEPEKPLIIHVGRFGREKNLDF 247
             A   +AN++RLWNKGVDS SF+P+FRS EMR+RLS+GEPEKPL+IHVGR G EK+L+ 
Sbjct: 266 IAAGATAANQLRLWNKGVDSESFNPRFRSQEMRIRLSNGEPEKPLVIHVGRIGVEKSLEL 325

Query: 248 LKTVMDRLPGVRIAFIGDGPYRSELEKMFEGMPAVFTGMMQGEELSQAYASGDVFVMPSE 307
           LK+VMD+LP  RIAFIGDGPY+ +LEK+F GMPAVFTG +QG+ELSQAYASGDVFVMPSE
Sbjct: 326 LKSVMDKLPEARIAFIGDGPYKEDLEKLFTGMPAVFTGTLQGDELSQAYASGDVFVMPSE 385

Query: 308 SETLGQVVLESMSSXXXXXXXXXXXXXDIIPEDQEGKTSFLFTPGDLEDCLGKIQLLLTD 367
           SETLG VVLE+MSS             DIIPEDQEGKT FLF PGD+EDC+ K++ LL D
Sbjct: 386 SETLGLVVLEAMSSGLPVVAARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTKLRTLLHD 445

Query: 368 KEFRDNMGMTARAEMEKCDWRAASKKIRNEFYNAAIWYWRKKRAELIKPLQWLAQMFLPA 427
           +E R+ +G  AR E EK DWRAA+ KIRNE Y+AAIW+WRKK+  ++ P+ WL +   P 
Sbjct: 446 RETREIIGKAAREETEKYDWRAATTKIRNEQYSAAIWFWRKKKVHVLGPINWLIKRLFPV 505

Query: 428 PEVN 431
           PE N
Sbjct: 506 PEGN 509



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,347,663
Number of extensions: 389142
Number of successful extensions: 759
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 334
Effective length of database: 8,310,137
Effective search space: 2775585758
Effective search space used: 2775585758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)