Os01g0141700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UV-damaged DNA binding protein 2.
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Os01g0141700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UV-damaged DNA binding protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.95 | 0.289 | 9.75 | 0.677 | 0.796 | -0.745 | -0.535 | 0.296 | -0.238 | 13.6 | 20.25 | 1731 | -- | -- |
| 38.14 | 0.288 | 9.76 | 0.636 | 0.789 | -0.775 | -0.579 | -- | -0.246 | 13.6 | 20.2 | 1730 | -- | -- |
| 39.06 | 0.291 | 9.76 | 0.662 | 0.793 | -0.741 | -- | 0.299 | -0.241 | 13.5 | 20.22 | 1767 | -- | -- |
| 39.23 | 0.292 | 9.76 | 0.613 | 0.796 | -0.779 | -- | -- | -0.253 | 13.5 | 20.21 | 1767 | -- | -- |
| 72.28 | 0.396 | 9.76 | 0.642 | -- | -0.749 | -- | 0.405 | -0.233 | -- | 20.5 | 991 | -- | -- |
| 50.5 | 0.333 | 9.8 | 0.295 | 0.795 | -- | -0.512 | -- | -0.42 | 13.6 | -- | -- | -- | -- |
| 51.52 | 0.336 | 9.8 | 0.278 | 0.794 | -- | -- | -- | -0.423 | 13.5 | -- | -- | -- | -- |
| 72.52 | 0.397 | 9.77 | 0.572 | -- | -0.826 | -- | -- | -0.261 | -- | 20.2 | 961 | -- | -- |
| 47.1 | 0.32 | 9.79 | -- | 0.781 | -0.515 | -- | -- | -0.345 | 13.5 | 20.2 | 1599 | -- | -- |
| 90.16 | 0.444 | 9.81 | 0.247 | -- | -- | -- | -- | -0.44 | -- | -- | -- | -- | -- |
| 53.56 | 0.342 | 9.81 | -- | 0.789 | -- | -- | -- | -0.454 | 13.5 | -- | -- | -- | -- |
| 79.88 | 0.416 | 9.8 | -- | -- | -0.625 | -- | -- | -0.361 | -- | 20.25 | 947 | -- | -- |
| 91.76 | 0.447 | 9.82 | -- | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.98 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 11 |
| 3 | 37.14 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 13 |
| 6 | 37.29 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 18 | 37.78 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 19 | 37.79 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 9 |
| 20 | 37.82 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 31 | 37.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 32 | 37.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 58 | 38.06 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 68 | 38.08 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 85 | 38.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 93 | 38.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 94 | 38.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 98 | 38.14 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 161 | 38.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 174 | 38.32 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 16 |
| 184 | 38.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 212 | 38.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 216 | 38.37 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 17 |
| 240 | 38.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 251 | 38.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 276 | 38.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 361 | 38.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 387 | 38.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 402 | 38.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 404 | 38.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 541 | 38.72 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 548 | 38.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 587 | 38.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 590 | 38.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 592 | 38.80 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 603 | 38.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 626 | 38.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 635 | 38.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 675 | 38.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 711 | 39.02 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 723 | 39.04 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 744 | 39.08 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 758 | 39.11 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 776 | 39.14 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 825 | 39.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 828 | 39.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |