Os01g0132700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Surfeit locus 5 family protein.
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Os01g0132700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Surfeit locus 5 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.59 | 0.238 | 10.1 | -0.29 | 0.231 | -1.03 | 0.532 | -0.487 | -0.189 | 21.3 | 15.07 | 497 | -- | -- |
| 25.7 | 0.236 | 10.1 | -0.216 | 0.213 | -1.02 | 0.474 | -- | -0.172 | 21.1 | 15.3 | 454 | -- | -- |
| 26.44 | 0.239 | 10.1 | -0.261 | 0.221 | -1.01 | -- | -0.14 | -0.181 | 21.7 | 14.97 | 477 | -- | -- |
| 26.45 | 0.24 | 10.1 | -0.236 | 0.214 | -1.01 | -- | -- | -0.174 | 21.7 | 15.1 | 475 | -- | -- |
| 27.93 | 0.246 | 10.1 | -0.293 | -- | -0.921 | -- | -0.165 | -0.202 | -- | 14.8 | 248 | -- | -- |
| 38.47 | 0.291 | 10.1 | -0.466 | 0.215 | -- | 0.115 | -- | -0.326 | 3.01 | -- | -- | -- | -- |
| 38.51 | 0.291 | 10.1 | -0.468 | 0.216 | -- | -- | -- | -0.327 | 3.22 | -- | -- | -- | -- |
| 27.95 | 0.246 | 10.1 | -0.269 | -- | -0.918 | -- | -- | -0.195 | -- | 15 | 250 | -- | -- |
| 27.75 | 0.245 | 10 | -- | 0.248 | -1.11 | -- | -- | -0.136 | 21.8 | 14.9 | 525 | -- | -- |
| 41.16 | 0.3 | 10.1 | -0.459 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 44.29 | 0.311 | 10.1 | -- | 0.207 | -- | -- | -- | -0.275 | 3.22 | -- | -- | -- | -- |
| 29.73 | 0.254 | 10 | -- | -- | -1.02 | -- | -- | -0.157 | -- | 14.7 | 251 | -- | -- |
| 46.73 | 0.319 | 10.1 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 24.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 31 | 24.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 56 | 25.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 67 | 25.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 72 | 25.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 81 | 25.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 90 | 25.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 106 | 25.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 110 | 25.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 140 | 25.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 153 | 25.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 323 | 25.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 354 | 26.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 367 | 26.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 383 | 26.05 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 397 | 26.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 443 | 26.12 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 684 | 26.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 738 | 26.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 757 | 26.34 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 872 | 26.41 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 980 | 26.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |