BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0132700 Os01g0132700|J065063N10
         (148 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16430.1  | chr1:5614632-5615397 FORWARD LENGTH=151            153   3e-38
AT1G07950.1  | chr1:2466061-2466982 REVERSE LENGTH=155            150   3e-37

>AT1G16430.1 | chr1:5614632-5615397 FORWARD LENGTH=151
          Length = 150

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 95/119 (79%)

Query: 29  KADADVSSLVDNFAAFINIARVNDPPVRNTQEAFQMDMRGSRLIHSADSLLKLVSELKRT 88
           + D D++S+VDNF   +N+ARV+DPP++N+QEA+ M+MR SRL+ +ADSLLKLVSELK+T
Sbjct: 32  RVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASRLVQAADSLLKLVSELKQT 91

Query: 89  AIFSGLASLTENVDRRIEILSQQAEGTERMLERIGQEAAGSLKELEAHYYSSVVRTPPD 147
           AIFSG ASL ++V++RI    Q+AE T R+L RI  +A+ SLKELE+HYYSS  R+  D
Sbjct: 92  AIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASLKELESHYYSSAQRSTLD 150



>AT1G07950.1 | chr1:2466061-2466982 REVERSE LENGTH=155
          Length = 154

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 94/119 (78%)

Query: 29  KADADVSSLVDNFAAFINIARVNDPPVRNTQEAFQMDMRGSRLIHSADSLLKLVSELKRT 88
           + + D++S+VDNF   +N++RV+DPPV+N+QE + M+MR SR++ +ADSLLKLVSELK+T
Sbjct: 35  RVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASRMVQAADSLLKLVSELKQT 94

Query: 89  AIFSGLASLTENVDRRIEILSQQAEGTERMLERIGQEAAGSLKELEAHYYSSVVRTPPD 147
           AIFSG ASL ++V++RIE   Q+AE T R+L RI  +A+ +LKELE+HYYSS  R   D
Sbjct: 95  AIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANLKELESHYYSSAQRLTLD 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,314,299
Number of extensions: 71008
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 107 (45.8 bits)