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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0126900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to spore coat protein-like protein [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0202) R2 : 0.00582
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0697 (0.0426) R2dN8 : 0.00752 R2N8 : 0.00582
σ : 0.381
deviance : 66.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.39 0.377 3.01 0.721 0.092 0.411 -0.151 -3.52 0.0229 6.94 29.8 1538 -- --
65.93 0.378 3.1 -0.0579 0.108 -0.0863 -0.19 -- -0.104 6.62 34.4 17755 -- --
64.43 0.374 3.01 0.716 0.0907 0.427 -- -3.66 0.02 7.5 29.76 1594 -- --
65.98 0.378 3.1 -0.0542 0.104 -0.0828 -- -- -0.0987 7.21 34.41 17237 -- --
64.62 0.374 3.01 0.722 -- 0.454 -- -3.73 0.0482 -- 29.7 1752 -- --
66.08 0.381 3.1 -0.0231 0.105 -- -0.163 -- -0.0748 6.73 -- -- -- --
66.14 0.381 3.1 -0.0254 0.105 -- -- -- -0.0741 7.09 -- -- -- --
66.54 0.382 3.1 -0.015 -- 0.0618 -- -- -0.0721 -- 29.7 1752 -- --
66.05 0.379 3.1 -- 0.104 -0.0643 -- -- -0.0878 7.22 34.48 17328 -- --
66.72 0.382 3.1 -0.0233 -- -- -- -- -0.0722 -- -- -- -- --
66.16 0.38 3.1 -- 0.104 -- -- -- -0.0713 7.1 -- -- -- --
66.52 0.381 3.1 -- -- 0.0536 -- -- -0.0682 -- 28.5 1792 -- --
66.73 0.381 3.1 -- -- -- -- -- -0.0697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.79 wind 1.0 90 < th dose dependent rect. 24 1
2 53.33 wind 1.0 90 < th dose independent rect. 24 1
3 55.89 humidity 90.0 30 < th dose independent rect. 22 1
4 55.92 wind 9.0 1440 < th dose independent rect. 23 1
5 55.92 temperature 10.0 1440 > th dose independent rect. 23 1
8 55.92 temperature 30.0 1440 < th dose independent rect. 23 1
12 55.92 humidity 50.0 1440 > th dose independent rect. 23 1
22 55.92 atmosphere 995.0 1440 > th dose independent rect. 23 1
23 55.92 radiation 1.0 1440 < th dose independent rect. 23 1
43 55.92 temperature 10.0 1440 > th dose independent rect. 24 23
46 55.92 radiation 1.0 1440 < th dose dependent rect. 23 1
51 55.93 atmosphere 1005.0 30 > th dose dependent rect. 22 1
53 55.96 atmosphere 1005.0 30 > th dose independent rect. 22 1
54 55.96 temperature 15.0 30 > th dose dependent rect. 22 1
58 55.99 wind 1.0 30 > th dose independent rect. 22 1
59 56.00 precipitation 0.1 30 < th dose independent rect. 22 1
60 56.00 precipitation 0.1 30 < th dose dependent rect. 22 1
61 56.01 temperature 25.0 30 > th dose independent rect. 22 1
62 56.02 wind 7.0 30 < th dose independent rect. 22 1
64 56.02 temperature 10.0 30 > th dose independent rect. 22 1
67 56.02 temperature 30.0 30 < th dose independent rect. 22 1
68 56.02 humidity 50.0 30 > th dose independent rect. 22 1
71 56.02 atmosphere 995.0 30 > th dose independent rect. 22 1
73 56.02 atmosphere 1010.0 30 < th dose independent rect. 22 1
75 56.02 radiation 1.0 30 < th dose independent rect. 22 1
80 56.02 temperature 10.0 30 > th dose independent rect. 23 23
81 56.02 radiation 1.0 30 < th dose dependent rect. 22 1
87 56.03 humidity 90.0 30 < th dose dependent rect. 22 1
89 56.05 wind 9.0 30 < th dose dependent rect. 22 1
91 56.11 humidity 50.0 30 > th dose dependent rect. 22 1
97 56.17 wind 1.0 30 > th dose dependent rect. 22 1
100 56.34 atmosphere 1015.0 30 < th dose dependent rect. 22 1
104 56.54 wind 9.0 30 < th dose independent rect. 23 23
105 56.54 temperature 30.0 30 < th dose dependent rect. 22 1
112 56.86 atmosphere 1005.0 30 < th dose dependent rect. 1 1
177 59.02 humidity 90.0 90 > th dose dependent rect. 24 1
206 61.03 humidity 90.0 90 > th dose independent rect. 24 1
207 61.04 atmosphere 1005.0 10 < th dose independent rect. 1 1
221 61.23 atmosphere 995.0 30 > th dose independent rect. 23 23
246 61.86 wind 1.0 90 < th dose independent rect. 13 13
252 61.95 atmosphere 1005.0 270 < th dose independent rect. 22 4
261 62.14 humidity 90.0 270 > th dose dependent rect. 22 4
283 62.44 precipitation 0.1 30 < th dose independent rect. 23 23
284 62.44 precipitation 0.1 30 < th dose dependent rect. 23 23
294 62.62 radiation 1.0 1440 < th dose independent rect. 11 1
296 62.62 radiation 1.0 1440 < th dose dependent rect. 11 1
318 62.83 wind 1.0 90 < th dose dependent rect. 13 13
322 62.86 temperature 20.0 30 > th dose independent rect. 1 1
341 63.02 radiation 1.0 720 < th dose independent rect. 14 1
343 63.02 radiation 1.0 720 < th dose dependent rect. 14 1
360 63.12 humidity 90.0 270 > th dose dependent rect. 12 14
368 63.16 temperature 25.0 30 > th dose independent rect. 20 3
373 63.19 atmosphere 1005.0 30 > th dose dependent rect. 20 3
380 63.28 humidity 70.0 14400 > th dose independent rect. 19 14
387 63.31 humidity 70.0 14400 < th dose independent rect. 19 14
390 63.31 radiation 1.0 14400 < th dose dependent rect. 9 4
392 63.34 radiation 1.0 14400 < th dose dependent rect. 8 6
394 63.36 precipitation 0.1 1440 < th dose independent rect. 23 1
397 63.36 precipitation 0.1 1440 < th dose dependent rect. 23 1
399 63.37 wind 9.0 14400 > th dose dependent rect. 14 1
406 63.39 humidity 80.0 14400 < th dose dependent rect. 3 6
415 63.43 radiation 1.0 14400 < th dose independent rect. 8 6
421 63.45 humidity 90.0 30 < th dose independent rect. 20 3
422 63.45 radiation 1.0 14400 > th dose independent rect. 8 6
429 63.47 precipitation 0.1 14400 > th dose independent rect. 1 5
432 63.47 humidity 80.0 14400 < th dose dependent rect. 20 13
435 63.48 precipitation 0.1 14400 > th dose dependent rect. 1 5
451 63.52 precipitation 0.1 14400 < th dose independent rect. 1 5
454 63.52 precipitation 0.1 14400 < th dose dependent rect. 1 5
460 63.55 radiation 1.0 4320 < th dose independent rect. 24 5
468 63.57 radiation 40.0 30 < th dose dependent rect. 23 23
476 63.60 radiation 1.0 14400 < th dose independent rect. 10 2
477 63.60 humidity 70.0 14400 < th dose independent rect. 6 4
498 63.62 atmosphere 1005.0 720 > th dose independent rect. 23 1
500 63.62 humidity 70.0 14400 > th dose independent rect. 4 5
503 63.62 humidity 60.0 14400 > th dose independent rect. 24 7
507 63.62 humidity 50.0 30 > th dose independent rect. 23 23
512 63.62 atmosphere 1005.0 10 < th dose dependent rect. 1 11
514 63.63 wind 9.0 14400 > th dose independent rect. 14 1
515 63.63 humidity 70.0 14400 > th dose independent rect. 6 3
519 63.63 radiation 30.0 14400 < th dose independent rect. 24 7
540 63.64 atmosphere 1005.0 90 < th dose dependent rect. 24 11
549 63.67 radiation 1.0 1440 < th dose independent rect. 8 3
554 63.67 radiation 1.0 1440 < th dose dependent rect. 8 3
564 63.68 radiation 1.0 14400 > th dose independent rect. 10 3
627 63.76 atmosphere 1015.0 30 < th dose independent rect. 23 23
639 63.77 radiation 40.0 14400 < th dose dependent rect. 24 5
643 63.78 radiation 1.0 4320 < th dose independent rect. 3 2
680 63.82 wind 9.0 14400 < th dose independent rect. 14 1
685 63.82 humidity 60.0 14400 < th dose independent rect. 10 2
686 63.82 atmosphere 1005.0 30 > th dose independent rect. 20 3
687 63.82 radiation 40.0 30 < th dose independent rect. 23 23
695 63.84 humidity 60.0 14400 > th dose independent rect. 21 3
700 63.84 humidity 80.0 14400 < th dose dependent rect. 20 3
722 63.87 humidity 90.0 43200 > th dose independent rect. 23 1
727 63.87 radiation 1.0 1440 < th dose dependent rect. 8 8
728 63.87 atmosphere 1005.0 10 < th dose dependent rect. 1 9
740 63.88 humidity 90.0 43200 > th dose dependent rect. 2 2
743 63.89 radiation 1.0 14400 < th dose independent rect. 8 1
756 63.90 temperature 30.0 14400 < th dose independent rect. 14 1
773 63.91 humidity 90.0 43200 < th dose independent rect. 23 1
774 63.91 radiation 1.0 1440 > th dose independent rect. 4 1
790 63.91 humidity 90.0 43200 > th dose dependent rect. 23 1
791 63.91 radiation 1.0 1440 > th dose dependent rect. 4 1
799 63.91 humidity 90.0 43200 > th dose dependent rect. 23 5
816 63.92 humidity 90.0 43200 > th dose independent rect. 20 8
826 63.93 humidity 90.0 720 < th dose independent rect. 23 1
828 63.93 wind 1.0 43200 > th dose independent rect. 19 2
829 63.93 temperature 30.0 14400 > th dose independent rect. 14 2
842 63.93 temperature 20.0 30 > th dose dependent rect. 20 3
848 63.94 radiation 1.0 14400 > th dose independent rect. 8 1
852 63.94 radiation 40.0 14400 < th dose independent rect. 16 8
876 63.95 radiation 1.0 14400 > th dose independent rect. 13 1
877 63.95 radiation 1.0 1440 > th dose independent rect. 14 1
880 63.95 humidity 90.0 43200 > th dose independent rect. 22 5
883 63.95 radiation 1.0 1440 < th dose independent rect. 8 7
884 63.95 atmosphere 1005.0 30 > th dose independent rect. 23 10
886 63.95 precipitation 0.1 14400 > th dose dependent rect. 5 1
895 63.95 wind 9.0 30 < th dose dependent rect. 23 23
898 63.96 radiation 1.0 1440 > th dose independent rect. 9 1
899 63.96 radiation 1.0 14400 < th dose independent rect. 13 1
909 63.96 radiation 1.0 14400 < th dose dependent rect. 13 1
922 63.97 precipitation 0.1 14400 > th dose independent rect. 5 1
923 63.97 precipitation 0.1 14400 < th dose independent rect. 5 1
928 63.97 radiation 40.0 14400 > th dose independent rect. 15 17
929 63.97 precipitation 0.1 14400 < th dose dependent rect. 5 1
934 63.97 radiation 10.0 1440 < th dose dependent rect. 24 5
939 63.98 wind 1.0 10 > th dose independent rect. 1 2
965 63.98 temperature 25.0 720 > th dose dependent rect. 23 10
969 63.99 wind 9.0 43200 < th dose independent rect. 24 1
971 63.99 humidity 60.0 14400 > th dose independent rect. 10 1
984 63.99 radiation 30.0 14400 < th dose independent rect. 3 4
990 63.99 humidity 90.0 43200 < th dose independent rect. 19 9
993 63.99 radiation 1.0 14400 < th dose independent rect. 19 10