BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0126900 Os01g0126900|AK109876
(595 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23010.1 | chr1:8147353-8149580 FORWARD LENGTH=582 606 e-173
AT1G71040.1 | chr1:26797201-26800224 REVERSE LENGTH=582 600 e-172
>AT1G23010.1 | chr1:8147353-8149580 FORWARD LENGTH=582
Length = 581
Score = 606 bits (1562), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/532 (55%), Positives = 364/532 (68%), Gaps = 7/532 (1%)
Query: 44 GSLQMYVDALPQMAKIRGYGFQRGQAVPINLTIGMYQKTWKFHRDLPATPVFVYGQCPDS 103
G L+M+VD LP M ++ G+ G P +L IGM+ WKFHRDLPATPVF YG
Sbjct: 38 GKLKMFVDDLPDMPRLYGFNSVHGIIKPASLQIGMFSTKWKFHRDLPATPVFAYGTSRSK 97
Query: 104 ATFPGPTIMARHDVPLFVRWENHLPASHILPWDPTVPTAIPKNGGVPTVVHLHGSAHPPQ 163
AT PGPTI + V +V W NHLP SHILPWDPT+ A PK+GG+PTVVHLHG H P
Sbjct: 98 ATVPGPTIETVYGVDTYVTWRNHLPKSHILPWDPTISPATPKHGGIPTVVHLHGGIHEPT 157
Query: 164 SDGSAFAWFTAGFAEKGPAWTQATYRYPNVQPPGNLWYHDHALGLTRANLLAGLLGAYVI 223
SDG+A AWFTAGF E GP WT+ T Y N Q PGN+WYHDHA+GLTR NLLAGL+GAY++
Sbjct: 158 SDGNADAWFTAGFRETGPKWTKTTLHYENKQQPGNMWYHDHAMGLTRVNLLAGLVGAYIL 217
Query: 224 EKPEVXXXXXXXXXXXXXH-LVIADRSFNVDGSLYMNSTGVAPNIHPQWAPEYFGEAITV 282
V L+I DRSF DGS+YMN+TG P+IHPQW PEYFG+ I V
Sbjct: 218 RHHAVESPFQLPTGDEFDRPLIIFDRSFRKDGSIYMNATGNNPSIHPQWQPEYFGDVIIV 277
Query: 283 NGKAWPFLVVHRRRYRLRILNASNARYFNVSLSNGLPIHVVGSDASYLSAPVTVSNLLLS 342
NGKAWP L V RR+YR RI+NASNAR+F SNGL VVGSD++YLS PV ++LLS
Sbjct: 278 NGKAWPRLNVRRRKYRFRIINASNARFFKFFFSNGLDFIVVGSDSAYLSKPVMTKSILLS 337
Query: 343 PAEIFDVVVDFSQSPTAEIELLNSAPYPFPTGAAPGPLNGKVMKFIVQPNGPLDPPDNST 402
P+EI DVVVDF +SP+ + L N APYP+P+G NGKVMKFI+ N D D T
Sbjct: 338 PSEIVDVVVDFYKSPSRTVVLANDAPYPYPSGDPVNEENGKVMKFIIN-NESED--DTCT 394
Query: 403 VPDHEVPYASVTALPPTTMTRYIVMYEYLTPTGQSTHLYINGLRLEDPVTETPKSGTTEL 462
+P + Y + + +TRYI MYEY++ + + THL +NGL E PVTETPKSGTTE+
Sbjct: 395 IPKKLINYPNAD-VSNAVLTRYISMYEYVSNSDEPTHLLVNGLPYEAPVTETPKSGTTEV 453
Query: 463 WQVINLTGDNHPLHIHLGMFQAVKMQQLV--NLQAFTDCMTAVNDAVKCNVDQHAVGPVV 520
W+VINLT DNHPLHIHLG+F+ V+ L+ L+ F +CMT NDAVKC + ++A G
Sbjct: 454 WEVINLTEDNHPLHIHLGLFKVVEQTALLAAGLEEFKECMTKQNDAVKCQISKYARGKKT 513
Query: 521 PVPDHEKTWKNVIKVPPGFVTSVVIAFKLVDTNQTYPFDTTAEPGYVYHCHV 572
V HE+ WKNV K+ PG VT +++ F + TN +YPFD T EPGYVYHCH+
Sbjct: 514 AVTAHERGWKNVFKMMPGHVTRILVRFSYIHTNASYPFDPTQEPGYVYHCHI 565
>AT1G71040.1 | chr1:26797201-26800224 REVERSE LENGTH=582
Length = 581
Score = 600 bits (1547), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/532 (55%), Positives = 362/532 (68%), Gaps = 9/532 (1%)
Query: 44 GSLQMYVDALPQMAKIRGYGFQRGQAVPINLTIGMYQKTWKFHRDLPATPVFVYGQCPDS 103
G L+M+VD LP + + GY F G P +L IGM+ K WKFHRDLPATPVF YG S
Sbjct: 40 GKLEMFVDKLPHIPTLHGYHFVNGFLKPKSLHIGMFFKKWKFHRDLPATPVFAYGTSKRS 99
Query: 104 ATFPGPTIMARHDVPLFVRWENHLPASHILPWDPTVPTAIPKNGGVPTVVHLHGSAHPPQ 163
AT PGPTI A + V +V W NHLP HILPWDPT+ AIPK+GG+PTVVHLHG H P
Sbjct: 100 ATVPGPTIEAVYGVDTYVTWRNHLPLHHILPWDPTISPAIPKHGGIPTVVHLHGGIHEPT 159
Query: 164 SDGSAFAWFTAGFAEKGPAWTQATYRYPNVQPPGNLWYHDHALGLTRANLLAGLLGAYVI 223
SDG+A +WFTAGF E G WT+ T Y N Q PGN+WYHDHA GLTR NLLAGLLG+Y++
Sbjct: 160 SDGNADSWFTAGFKETGSKWTKKTTHYVNKQQPGNMWYHDHAAGLTRVNLLAGLLGSYIL 219
Query: 224 EKPEVXXXXXXXXXXXXXH-LVIADRSFNVDGSLYMNSTGVAPNIHPQWAPEYFGEAITV 282
V LVI DRSF DGS+YMN+TG P IHPQW PEYFG+AI V
Sbjct: 220 RHSSVESPLRLPTGREFDRPLVIFDRSFRKDGSIYMNATGNNPTIHPQWQPEYFGDAIIV 279
Query: 283 NGKAWPFLVVHRRRYRLRILNASNARYFNVSLSNGLPIHVVGSDASYLSAPVTVSNLLLS 342
NGKAWP L V RR+YR RI NASNAR+F SNGL VVGSD++YL+ PV+ ++LL+
Sbjct: 280 NGKAWPRLTVRRRKYRFRITNASNARFFRFFFSNGLDFIVVGSDSAYLAKPVSTKSVLLA 339
Query: 343 PAEIFDVVVDFSQSPTAEIELLNSAPYPFPTGAAPGPLNGKVMKFIVQPNGPLDPPDNST 402
P+EI DV+VDFS+S + L N+APYP+P+G N KVMKFI+ + D S
Sbjct: 340 PSEIVDVLVDFSKSTSKTAILANNAPYPYPSGDPVTEENSKVMKFIINYKSEV---DTSI 396
Query: 403 VPDH--EVPYASVTALPPTTMTRYIVMYEYLTPTGQSTHLYINGLRLEDPVTETPKSGTT 460
+P E P A V+ +T TRYI M+EY++ + THLYINGL PVTETPK GT+
Sbjct: 397 IPKKLIEYPPAHVST---STRTRYIAMFEYVSSIDEPTHLYINGLPYNAPVTETPKIGTS 453
Query: 461 ELWQVINLTGDNHPLHIHLGMFQAVKMQQLVNLQAFTDCMTAVNDAVKCNVDQHAVGPVV 520
E+W+VINLT DNHPLHIHLG+F+ ++ LV + F +CMT NDAVKC + ++A G
Sbjct: 454 EVWEVINLTEDNHPLHIHLGLFKVLEQTALVKSEEFIECMTKRNDAVKCEISKYARGNKT 513
Query: 521 PVPDHEKTWKNVIKVPPGFVTSVVIAFKLVDTNQTYPFDTTAEPGYVYHCHV 572
V HE+ WKNV K+ PG VT +++ F + +N++Y FD T EPGYVYHCH+
Sbjct: 514 AVTVHERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGYVYHCHI 565
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,318,762
Number of extensions: 606576
Number of successful extensions: 1281
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 2
Length of query: 595
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 491
Effective length of database: 8,255,305
Effective search space: 4053354755
Effective search space used: 4053354755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)