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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0126100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0312) R2 : 0.499
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.46 (0.0785) R2dC : 0.397 R2C : 0.334
β3 : -0.791 (0.102) R2dE : 0.0652 R2E : 0.00621
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.563 (0.0658) R2dN8 : 0.107 R2N8 : 0.0673
σ : 0.586
deviance : 158.53
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_____
C
peak time of C : 3.15
E
wheather : temperature
threshold : 26.44
memory length : 3316
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.28 0.57 4.49 1.16 1.56 -1.03 -0.422 1.81 -0.172 3.09 22.18 1242 -- --
149.24 0.569 4.5 0.828 1.46 -0.881 -0.491 -- -0.145 3.26 22.24 10515 -- --
147.8 0.566 4.48 1.18 1.56 -1.04 -- 1.86 -0.171 3.12 22.64 1269 -- --
149.33 0.569 4.55 0.668 1.54 -0.856 -- -- -0.354 3.21 22.98 2780 -- --
201.05 0.664 4.49 1.04 -- -1.99 -- 1.97 -0.112 -- 22.64 1269 -- --
175.25 0.621 4.59 0.339 1.43 -- -0.402 -- -0.511 3.26 -- -- -- --
175.77 0.621 4.59 0.347 1.42 -- -- -- -0.509 3.28 -- -- -- --
203.99 0.668 4.53 0.739 -- -1.86 -- -- -0.203 -- 22.64 1269 -- --
158.53 0.586 4.6 -- 1.46 -0.791 -- -- -0.563 3.15 26.44 3316 -- --
290.62 0.797 4.59 0.407 -- -- -- -- -0.471 -- -- -- -- --
178.94 0.626 4.6 -- 1.43 -- -- -- -0.547 3.28 -- -- -- --
217.92 0.69 4.55 -- -- -1.73 -- -- -0.302 -- 22.64 1269 -- --
294.99 0.802 4.6 -- -- -- -- -- -0.516 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.09 wind 9.0 43200 > th dose dependent rect. 19 9
2 141.16 wind 9.0 43200 > th dose dependent rect. 20 3
3 141.23 wind 9.0 43200 > th dose dependent rect. 19 5
18 141.86 wind 9.0 43200 > th dose independent rect. 19 5
19 141.86 wind 9.0 43200 > th dose independent rect. 19 9
23 142.03 wind 9.0 43200 < th dose independent rect. 19 2
24 142.03 wind 9.0 43200 > th dose independent rect. 19 3
30 142.54 wind 9.0 43200 > th dose dependent rect. 17 13
31 142.61 wind 9.0 43200 < th dose independent rect. 19 6
32 142.61 wind 9.0 43200 < th dose independent rect. 19 9
42 142.89 wind 9.0 43200 > th dose dependent rect. 17 8
57 143.38 precipitation 0.1 43200 < th dose independent rect. 17 1
58 143.38 precipitation 0.1 43200 < th dose dependent rect. 17 1
62 143.48 precipitation 0.1 43200 > th dose independent rect. 17 1
65 143.58 precipitation 0.1 43200 > th dose dependent rect. 16 2
76 143.99 precipitation 0.1 43200 > th dose dependent rect. 17 4
81 144.22 temperature 10.0 720 > th dose dependent rect. 19 12
85 144.32 wind 9.0 43200 > th dose dependent rect. 17 4
86 144.36 humidity 80.0 14400 > th dose independent rect. 17 1
95 144.71 humidity 80.0 14400 < th dose independent rect. 17 1
96 144.72 precipitation 0.1 43200 > th dose dependent rect. 19 2
101 144.96 wind 9.0 43200 > th dose independent rect. 17 11
103 144.99 humidity 80.0 43200 > th dose dependent rect. 20 1
107 145.07 wind 9.0 43200 > th dose independent rect. 17 8
111 145.12 humidity 60.0 14400 < th dose dependent rect. 17 2
122 145.29 humidity 60.0 14400 < th dose dependent rect. 17 15
144 145.41 humidity 50.0 14400 < th dose dependent rect. 17 17
150 145.51 humidity 60.0 14400 > th dose independent rect. 18 1
151 145.51 radiation 1.0 43200 < th dose dependent rect. 20 8
156 145.62 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
159 145.64 humidity 50.0 14400 < th dose independent rect. 17 17
166 145.81 atmosphere 1000.0 43200 < th dose dependent rect. 14 1
168 145.84 radiation 1.0 43200 < th dose dependent rect. 20 5
173 145.87 atmosphere 1000.0 43200 < th dose dependent rect. 12 3
175 145.89 humidity 60.0 14400 < th dose independent rect. 18 1
180 145.92 humidity 50.0 14400 > th dose independent rect. 17 16
181 145.94 atmosphere 1000.0 43200 < th dose independent rect. 12 1
221 146.19 humidity 50.0 14400 > th dose independent rect. 17 3
230 146.24 temperature 10.0 720 > th dose dependent rect. 19 21
263 146.32 atmosphere 1000.0 43200 > th dose independent rect. 12 1
273 146.35 humidity 50.0 14400 > th dose independent rect. 17 7
274 146.35 temperature 10.0 720 > th dose dependent rect. 13 18
277 146.37 wind 9.0 43200 > th dose independent rect. 17 4
296 146.48 humidity 70.0 14400 < th dose independent rect. 19 12
298 146.48 humidity 50.0 14400 > th dose independent rect. 17 14
299 146.49 humidity 50.0 14400 > th dose independent rect. 17 12
313 146.54 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
330 146.59 humidity 80.0 43200 > th dose independent rect. 23 1
348 146.65 temperature 25.0 1440 > th dose dependent rect. 11 4
375 146.72 temperature 10.0 1440 > th dose dependent rect. 9 6
382 146.76 temperature 10.0 720 > th dose dependent sin 11 NA
413 146.88 wind 5.0 43200 > th dose dependent rect. 17 19
424 146.91 wind 5.0 43200 > th dose independent rect. 15 21
434 146.93 wind 5.0 43200 < th dose independent rect. 15 21
437 146.94 temperature 25.0 4320 > th dose dependent rect. 7 1
443 146.95 wind 9.0 43200 > th dose dependent sin 14 NA
450 146.97 atmosphere 1000.0 43200 < th dose independent rect. 20 1
512 147.10 humidity 50.0 14400 < th dose independent rect. 16 1
531 147.11 atmosphere 1000.0 43200 < th dose independent rect. 14 1
555 147.16 radiation 30.0 4320 < th dose independent rect. 15 17
599 147.26 atmosphere 1000.0 43200 > th dose independent rect. 14 1
602 147.27 radiation 1.0 14400 < th dose independent rect. 17 1
628 147.29 atmosphere 1000.0 43200 > th dose independent rect. 20 1
655 147.34 atmosphere 1000.0 43200 < th dose independent rect. 3 1
667 147.35 radiation 20.0 4320 > th dose dependent rect. 15 17
763 147.48 temperature 20.0 1440 > th dose dependent rect. 9 13
765 147.49 precipitation 0.1 43200 < th dose independent rect. 20 1
768 147.49 precipitation 0.1 43200 < th dose dependent rect. 20 1
770 147.49 radiation 1.0 43200 < th dose dependent rect. 24 4
799 147.54 temperature 20.0 1440 > th dose dependent sin 22 NA
802 147.55 atmosphere 1000.0 43200 > th dose independent rect. 3 1
804 147.55 temperature 10.0 1440 > th dose dependent sin 23 NA
811 147.56 precipitation 0.1 43200 > th dose independent rect. 20 1
828 147.57 radiation 1.0 14400 < th dose independent rect. 17 12
883 147.62 wind 5.0 43200 > th dose independent rect. 17 23
884 147.62 wind 3.0 43200 > th dose dependent rect. 9 1
887 147.62 atmosphere 1000.0 43200 < th dose dependent rect. 19 10
903 147.63 atmosphere 1000.0 43200 < th dose dependent rect. 19 1
912 147.63 temperature 30.0 720 < th dose dependent rect. 16 19
944 147.66 radiation 1.0 43200 < th dose dependent rect. 1 1
950 147.67 radiation 1.0 14400 < th dose independent rect. 17 3
951 147.67 radiation 1.0 14400 < th dose independent rect. 17 6
981 147.69 wind 9.0 43200 < th dose independent sin 12 NA
994 147.70 atmosphere 1000.0 43200 < th dose dependent sin 22 NA