BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0126100 Os01g0126100|AK106990
(582 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23010.1 | chr1:8147353-8149580 FORWARD LENGTH=582 689 0.0
AT1G71040.1 | chr1:26797201-26800224 REVERSE LENGTH=582 674 0.0
>AT1G23010.1 | chr1:8147353-8149580 FORWARD LENGTH=582
Length = 581
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 398/552 (72%), Gaps = 4/552 (0%)
Query: 32 EDTLQKVAGSLEMYVDELPQMPKIYGFSMRHGHPSPIRLTIGMYQKKWKFHRDLPASTVF 91
ED L +V G L+M+VD+LP MP++YGF+ HG P L IGM+ KWKFHRDLPA+ VF
Sbjct: 31 EDQLFEV-GKLKMFVDDLPDMPRLYGFNSVHGIIKPASLQIGMFSTKWKFHRDLPATPVF 89
Query: 92 VFGTSAATATFPGPTIEAAQGVPLSVTWQNYLPARHILPWDPTVPTAIPRRGGVPTVVHL 151
+GTS + AT PGPTIE GV VTW+N+LP HILPWDPT+ A P+ GG+PTVVHL
Sbjct: 90 AYGTSRSKATVPGPTIETVYGVDTYVTWRNHLPKSHILPWDPTISPATPKHGGIPTVVHL 149
Query: 152 HGGAHPPQSDGSAFAWFTAGFGETGPAWSTPTYTYPNAQSPGVLWYHDHALGLTRANLLA 211
HGG H P SDG+A AWFTAGF ETGP W+ T Y N Q PG +WYHDHA+GLTR NLLA
Sbjct: 150 HGGIHEPTSDGNADAWFTAGFRETGPKWTKTTLHYENKQQPGNMWYHDHAMGLTRVNLLA 209
Query: 212 GLLGAYVIRNPAVEAPLGLPCGDEFDRVLMLADRSFYADGSIYMNYTGIIPNIHPQWQPE 271
GL+GAY++R+ AVE+P LP GDEFDR L++ DRSF DGSIYMN TG P+IHPQWQPE
Sbjct: 210 GLVGAYILRHHAVESPFQLPTGDEFDRPLIIFDRSFRKDGSIYMNATGNNPSIHPQWQPE 269
Query: 272 YFGEAITVNGKAWPFLAVARRRYRFRIINTSNARYFNLSLTNGLPFTVVGSDTNYLSKPV 331
YFG+ I VNGKAWP L V RR+YRFRIIN SNAR+F +NGL F VVGSD+ YLSKPV
Sbjct: 270 YFGDVIIVNGKAWPRLNVRRRKYRFRIINASNARFFKFFFSNGLDFIVVGSDSAYLSKPV 329
Query: 332 TAASLLVSVAETFDVVVDFSQSTSSEAELVNTAPYPYPDGQAPNDLNGKVMKFVISPAKA 391
S+L+S +E DVVVDF +S S L N APYPYP G N+ NGKVMKF+I+
Sbjct: 330 MTKSILLSPSEIVDVVVDFYKSPSRTVVLANDAPYPYPSGDPVNEENGKVMKFIINNESE 389
Query: 392 KDTSRVPAKLLDYVAVAEEEAVQRRYIVMYEYEDAATGNPTHLYINGKRLEDPATETPRP 451
DT +P KL++Y AV RYI MYEY + + PTHL +NG E P TETP+
Sbjct: 390 DDTCTIPKKLINYPNADVSNAVLTRYISMYEYV-SNSDEPTHLLVNGLPYEAPVTETPKS 448
Query: 452 GTTEVWEVINLTPDNHPLHLHLATFQATRVRGLVDE--DAFKGCMAKLNDAVRCNVSRHA 509
GTTEVWEVINLT DNHPLH+HL F+ L+ + FK CM K NDAV+C +S++A
Sbjct: 449 GTTEVWEVINLTEDNHPLHIHLGLFKVVEQTALLAAGLEEFKECMTKQNDAVKCQISKYA 508
Query: 510 VGEEVAVPEHEKGWKNVVKIAPGYMTTIVVKFFMVDSGKPYPFDATAEPGYVYHCHILDH 569
G++ AV HE+GWKNV K+ PG++T I+V+F + + YPFD T EPGYVYHCHILDH
Sbjct: 509 RGKKTAVTAHERGWKNVFKMMPGHVTRILVRFSYIHTNASYPFDPTQEPGYVYHCHILDH 568
Query: 570 EDNAMIRPLKLI 581
EDN M+RPLK+I
Sbjct: 569 EDNMMMRPLKVI 580
>AT1G71040.1 | chr1:26797201-26800224 REVERSE LENGTH=582
Length = 581
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/542 (58%), Positives = 391/542 (72%), Gaps = 1/542 (0%)
Query: 40 GSLEMYVDELPQMPKIYGFSMRHGHPSPIRLTIGMYQKKWKFHRDLPASTVFVFGTSAAT 99
G LEM+VD+LP +P ++G+ +G P L IGM+ KKWKFHRDLPA+ VF +GTS +
Sbjct: 40 GKLEMFVDKLPHIPTLHGYHFVNGFLKPKSLHIGMFFKKWKFHRDLPATPVFAYGTSKRS 99
Query: 100 ATFPGPTIEAAQGVPLSVTWQNYLPARHILPWDPTVPTAIPRRGGVPTVVHLHGGAHPPQ 159
AT PGPTIEA GV VTW+N+LP HILPWDPT+ AIP+ GG+PTVVHLHGG H P
Sbjct: 100 ATVPGPTIEAVYGVDTYVTWRNHLPLHHILPWDPTISPAIPKHGGIPTVVHLHGGIHEPT 159
Query: 160 SDGSAFAWFTAGFGETGPAWSTPTYTYPNAQSPGVLWYHDHALGLTRANLLAGLLGAYVI 219
SDG+A +WFTAGF ETG W+ T Y N Q PG +WYHDHA GLTR NLLAGLLG+Y++
Sbjct: 160 SDGNADSWFTAGFKETGSKWTKKTTHYVNKQQPGNMWYHDHAAGLTRVNLLAGLLGSYIL 219
Query: 220 RNPAVEAPLGLPCGDEFDRVLMLADRSFYADGSIYMNYTGIIPNIHPQWQPEYFGEAITV 279
R+ +VE+PL LP G EFDR L++ DRSF DGSIYMN TG P IHPQWQPEYFG+AI V
Sbjct: 220 RHSSVESPLRLPTGREFDRPLVIFDRSFRKDGSIYMNATGNNPTIHPQWQPEYFGDAIIV 279
Query: 280 NGKAWPFLAVARRRYRFRIINTSNARYFNLSLTNGLPFTVVGSDTNYLSKPVTAASLLVS 339
NGKAWP L V RR+YRFRI N SNAR+F +NGL F VVGSD+ YL+KPV+ S+L++
Sbjct: 280 NGKAWPRLTVRRRKYRFRITNASNARFFRFFFSNGLDFIVVGSDSAYLAKPVSTKSVLLA 339
Query: 340 VAETFDVVVDFSQSTSSEAELVNTAPYPYPDGQAPNDLNGKVMKFVISPAKAKDTSRVPA 399
+E DV+VDFS+STS A L N APYPYP G + N KVMKF+I+ DTS +P
Sbjct: 340 PSEIVDVLVDFSKSTSKTAILANNAPYPYPSGDPVTEENSKVMKFIINYKSEVDTSIIPK 399
Query: 400 KLLDYVAVAEEEAVQRRYIVMYEYEDAATGNPTHLYINGKRLEDPATETPRPGTTEVWEV 459
KL++Y + + RYI M+EY ++ PTHLYING P TETP+ GT+EVWEV
Sbjct: 400 KLIEYPPAHVSTSTRTRYIAMFEYV-SSIDEPTHLYINGLPYNAPVTETPKIGTSEVWEV 458
Query: 460 INLTPDNHPLHLHLATFQATRVRGLVDEDAFKGCMAKLNDAVRCNVSRHAVGEEVAVPEH 519
INLT DNHPLH+HL F+ LV + F CM K NDAV+C +S++A G + AV H
Sbjct: 459 INLTEDNHPLHIHLGLFKVLEQTALVKSEEFIECMTKRNDAVKCEISKYARGNKTAVTVH 518
Query: 520 EKGWKNVVKIAPGYMTTIVVKFFMVDSGKPYPFDATAEPGYVYHCHILDHEDNAMIRPLK 579
E+GWKNV K+ PG++T I+V+F + S + Y FDAT EPGYVYHCHILDHEDN M+RP
Sbjct: 519 ERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGYVYHCHILDHEDNMMMRPFA 578
Query: 580 LI 581
++
Sbjct: 579 MV 580
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,602,404
Number of extensions: 617304
Number of successful extensions: 1325
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1322
Number of HSP's successfully gapped: 2
Length of query: 582
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 478
Effective length of database: 8,255,305
Effective search space: 3946035790
Effective search space used: 3946035790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)