Os01g0120300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminoacyl-tRNA synthetase, class 1a, anticodon-binding domain containing protein.
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Os01g0120300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminoacyl-tRNA synthetase, class 1a, anticodon-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.86 | 0.328 | 12.3 | -1.03 | 0.979 | -1.65 | -0.641 | -1.23 | -0.321 | 22.5 | 30.29 | 273 | -- | -- |
| 50.44 | 0.331 | 12.3 | -1.22 | 0.963 | -1.66 | -0.524 | -- | -0.354 | 22.5 | 31.1 | 282 | -- | -- |
| 50.47 | 0.331 | 12.3 | -0.992 | 0.997 | -1.64 | -- | -1.3 | -0.323 | 22.5 | 30.08 | 258 | -- | -- |
| 52.3 | 0.337 | 12.3 | -1.22 | 0.941 | -1.68 | -- | -- | -0.372 | 22.4 | 30.83 | 305 | -- | -- |
| 80.48 | 0.418 | 12.3 | -1.35 | -- | -2.23 | -- | -0.0319 | -0.398 | -- | 60.4 | 651 | -- | -- |
| 86.14 | 0.435 | 12.2 | -0.832 | 1.11 | -- | -0.558 | -- | -0.059 | 20.7 | -- | -- | -- | -- |
| 87.15 | 0.437 | 12.2 | -0.813 | 1.12 | -- | -- | -- | -0.0584 | 20.7 | -- | -- | -- | -- |
| 80.08 | 0.417 | 12.3 | -1.38 | -- | -2.21 | -- | -- | -0.453 | -- | 31.51 | 651 | -- | -- |
| 87.11 | 0.435 | 12.2 | -- | 0.957 | -1.08 | -- | -- | -0.116 | 21.7 | 31.5 | 295 | -- | -- |
| 157.37 | 0.586 | 12.2 | -0.815 | -- | -- | -- | -- | -0.0679 | -- | -- | -- | -- | -- |
| 104.56 | 0.478 | 12.2 | -- | 1.12 | -- | -- | -- | 0.0321 | 20.6 | -- | -- | -- | -- |
| 124.16 | 0.519 | 12.2 | -- | -- | -1.73 | -- | -- | -0.192 | -- | 33.9 | 613 | -- | -- |
| 174.91 | 0.617 | 12.2 | -- | -- | -- | -- | -- | 0.0226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.49 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 3 | 46.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 4 | 46.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 5 | 46.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 12 | 46.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 18 | 46.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 23 | 47.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 59 | 47.90 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 102 | 48.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 119 | 48.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 123 | 48.88 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 126 | 48.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 176 | 49.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 211 | 49.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 258 | 50.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 323 | 50.62 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 380 | 51.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 421 | 51.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 597 | 52.44 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 701 | 52.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 739 | 53.07 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 798 | 53.23 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 848 | 53.44 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 950 | 53.77 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 20 |
| 1000 | 53.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |