BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120300 Os01g0120300|009-145-A05
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04350.1  | chr4:2128129-2133030 FORWARD LENGTH=974            207   2e-54

>AT4G04350.1 | chr4:2128129-2133030 FORWARD LENGTH=974
          Length = 973

 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 114/136 (83%)

Query: 1   EIQETRFNTAISAMMEFVNAAYKWDTQPKSVIESFILLLSPFAPHMAEELWFRLGNSRSL 60
           EI+ TRFNT IS MMEFVNAAYKW+ QP+ +IE F+LLLSP+APHMAEELW RLG+  SL
Sbjct: 827 EIESTRFNTGISGMMEFVNAAYKWNNQPRGIIEPFVLLLSPYAPHMAEELWSRLGHPNSL 886

Query: 61  AHEQFPEGKSEYLKESKLVLPVQINGKTRGTILVDKECSEDDAFQIAASDEKLSKYLTGK 120
           A+E FP+   +YLK + +VLPVQINGKTRGTI V++ CSEDDAF +A+ D+KL KYL G+
Sbjct: 887 AYESFPKANPDYLKNTTIVLPVQINGKTRGTIEVEEGCSEDDAFVLASQDDKLRKYLDGQ 946

Query: 121 GIRKRIYVPGRILNVI 136
            I+KRIYVPG+ILNVI
Sbjct: 947 SIKKRIYVPGKILNVI 962



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,907,633
Number of extensions: 112060
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)