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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0106300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Isoflavone reductase homolog IRL (EC 1.3.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.0993) R2 : 0.28
β1 : -3.88 (0.364) R2dD : 0.188 R2D : 0.118
β2 : 0.692 (0.236) R2dC : 0.0135 R2C : 0.00181
β3 : 3.28 (0.449) R2dE : 0.0856 R2E : 0.063
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.997 (0.213) R2dN8 : 0.0474 R2N8 : 0.0192
σ : 1.85
deviance : 1581.79
__
_____
C
peak time of C : 23.1
E
wheather : wind
threshold : 0.909
memory length : 98
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.86
open length of G : 0.749

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1577.89 1.87 5.74 -3.73 0.667 2.91 1.49 2.31 -1.02 0.809 0.9776 93 3.92 0.733
1575.93 1.85 5.74 -3.81 0.658 3.12 1.5 -- -1.01 0.692 0.9919 96 3.86 0.75
1583.2 1.85 5.73 -3.78 0.667 2.97 -- 2.22 -0.991 0.184 0.9002 96 3.88 0.718
1581.79 1.85 5.75 -3.88 0.692 3.28 -- -- -0.997 23.1 0.909 98 3.86 0.749
1611.14 1.87 5.72 -3.8 -- 3.13 -- 1.83 -0.999 -- 0.9195 96 3.85 0.733
1711.98 1.94 5.76 -3.64 0.93 -- 3.23 -- -1.17 3.2 -- -- -- --
1741.77 1.95 5.78 -3.7 0.956 -- -- -- -1.19 2.12 -- -- -- --
1611.29 1.87 5.73 -3.87 -- 3.33 -- -- -0.999 -- 0.9299 96 3.86 0.745
1975.02 2.07 5.66 -- 0.655 2.97 -- -- -0.591 23 0.9999 96 3.8 0.787
1796.45 1.98 5.77 -3.66 -- -- -- -- -1.17 -- -- -- -- --
2103.52 2.15 5.69 -- 0.886 -- -- -- -0.779 2.03 -- -- -- --
2001.04 2.08 5.64 -- -- 2.97 -- -- -0.589 -- 0.9856 96 3.82 0.773
2150.74 2.16 5.68 -- -- -- -- -- -0.762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1587.80 wind 1.0 90 < th dose dependent rect. 4 1
2 1587.92 wind 1.0 90 < th dose independent rect. 4 1
3 1595.33 atmosphere 1005.0 270 < th dose dependent rect. 8 12
4 1596.60 humidity 50.0 1440 < th dose independent rect. 16 1
5 1596.83 humidity 50.0 1440 > th dose independent rect. 16 1
6 1596.98 humidity 50.0 1440 < th dose dependent rect. 16 1
9 1598.02 humidity 90.0 30 > th dose independent rect. 4 10
14 1598.22 atmosphere 1005.0 720 < th dose dependent rect. 11 1
17 1598.95 humidity 90.0 30 > th dose independent rect. 4 8
22 1599.64 atmosphere 1005.0 720 < th dose dependent rect. 8 5
26 1600.00 humidity 90.0 90 > th dose dependent rect. 4 1
28 1600.65 temperature 30.0 720 > th dose dependent rect. 18 1
42 1601.47 atmosphere 1005.0 90 < th dose dependent rect. 10 13
64 1604.97 atmosphere 1005.0 270 < th dose dependent sin 22 NA
79 1607.00 humidity 90.0 90 > th dose independent rect. 4 1
111 1610.73 atmosphere 1005.0 90 < th dose dependent rect. 10 18
135 1612.77 temperature 15.0 90 > th dose dependent rect. 4 1
136 1612.81 temperature 25.0 90 < th dose independent rect. 4 1
174 1614.28 wind 3.0 10 < th dose dependent rect. 4 2
180 1614.46 atmosphere 995.0 4320 > th dose independent rect. 5 1
181 1614.51 wind 1.0 10 > th dose independent rect. 20 19
182 1614.52 temperature 15.0 1440 > th dose independent rect. 6 10
184 1614.62 wind 1.0 720 < th dose dependent rect. 4 1
193 1615.40 humidity 90.0 14400 < th dose independent rect. 2 4
205 1616.23 temperature 25.0 720 > th dose dependent rect. 21 2
223 1617.32 wind 9.0 90 < th dose independent rect. 5 23
228 1617.56 atmosphere 1005.0 720 < th dose independent rect. 10 1
248 1619.06 atmosphere 1000.0 90 > th dose independent rect. 4 1
249 1619.09 wind 1.0 14400 > th dose independent rect. 1 2
270 1619.67 temperature 30.0 720 < th dose independent rect. 18 8
271 1619.74 radiation 1.0 90 < th dose independent rect. 4 1
274 1619.80 radiation 10.0 90 < th dose dependent rect. 4 1
277 1619.97 wind 1.0 10 > th dose independent rect. 23 16
279 1620.02 temperature 15.0 90 > th dose independent rect. 5 23
294 1620.33 temperature 10.0 90 > th dose independent rect. 4 1
297 1620.33 humidity 50.0 90 > th dose independent rect. 4 1
301 1620.33 atmosphere 1010.0 90 < th dose independent rect. 4 1
308 1620.39 precipitation 0.1 90 < th dose independent rect. 4 1
309 1620.39 precipitation 0.1 90 < th dose dependent rect. 4 1
312 1620.45 humidity 80.0 10 > th dose dependent rect. 4 10
316 1620.62 humidity 70.0 720 < th dose dependent rect. 18 1
320 1620.70 radiation 1.0 720 > th dose dependent rect. 18 11
335 1621.21 humidity 90.0 10 > th dose independent rect. 4 2
346 1621.38 humidity 70.0 720 < th dose dependent rect. 18 13
386 1621.93 humidity 70.0 720 > th dose independent rect. 19 8
398 1622.37 humidity 90.0 30 > th dose dependent rect. 4 8
419 1623.02 atmosphere 1005.0 4320 > th dose independent rect. 8 3
428 1623.24 wind 1.0 720 < th dose independent rect. 4 1
447 1623.65 atmosphere 1005.0 4320 < th dose independent rect. 8 3
452 1623.74 atmosphere 1005.0 4320 < th dose independent rect. 8 1
454 1623.77 humidity 60.0 720 < th dose independent rect. 18 1
458 1623.83 atmosphere 1005.0 720 < th dose independent rect. 9 3
460 1623.90 temperature 25.0 720 > th dose independent rect. 17 7
480 1624.00 wind 1.0 10 > th dose independent sin 4 NA
485 1624.07 temperature 30.0 720 > th dose independent rect. 18 1
499 1624.07 atmosphere 1015.0 90 < th dose dependent rect. 4 1
504 1624.10 wind 1.0 14400 < th dose independent rect. 1 2
510 1624.26 atmosphere 1005.0 720 > th dose independent rect. 9 2
602 1625.97 humidity 50.0 1440 > th dose independent rect. 16 13
615 1626.19 humidity 70.0 720 > th dose independent rect. 18 14
623 1626.38 humidity 90.0 10 > th dose independent rect. 4 6
625 1626.45 temperature 20.0 90 > th dose independent rect. 3 16
627 1626.46 radiation 1.0 1440 > th dose independent rect. 18 1
650 1626.58 humidity 50.0 1440 > th dose independent rect. 16 8
659 1626.67 humidity 50.0 1440 > th dose independent rect. 16 17
661 1626.68 humidity 50.0 1440 > th dose independent rect. 16 4
665 1626.76 atmosphere 1005.0 270 > th dose independent rect. 9 4
717 1627.28 radiation 20.0 1440 > th dose independent rect. 16 15
722 1627.35 atmosphere 995.0 90 > th dose dependent rect. 4 1
731 1627.62 temperature 25.0 720 < th dose independent rect. 18 6
773 1628.09 radiation 1.0 1440 < th dose independent rect. 18 9
794 1628.21 wind 9.0 270 > th dose dependent rect. 11 5
805 1628.33 radiation 1.0 720 > th dose dependent rect. 18 1
840 1628.73 atmosphere 1000.0 30 > th dose independent rect. 4 15
844 1628.80 radiation 1.0 1440 < th dose independent rect. 18 7
875 1629.15 radiation 20.0 1440 > th dose independent rect. 16 1
890 1629.18 humidity 90.0 30 > th dose dependent rect. 4 6
961 1629.75 wind 3.0 10 < th dose dependent rect. 2 5
962 1629.76 humidity 80.0 720 > th dose dependent rect. 3 2
966 1629.80 radiation 1.0 1440 < th dose independent rect. 18 2
971 1629.87 temperature 20.0 10 > th dose independent rect. 15 16
983 1629.98 atmosphere 995.0 4320 > th dose independent rect. 3 3
991 1630.07 humidity 90.0 4320 > th dose dependent rect. 2 2