Os01g0104100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0104100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.89 | 0.199 | 15.5 | 1.18 | 0.717 | -0.774 | -0.196 | 4.86 | 0.204 | 22 | 33.8 | 998 | -- | -- |
| 19.84 | 0.207 | 15.5 | 0.618 | 0.679 | -0.191 | -0.132 | -- | 0.362 | 21.8 | 28.7 | 14089 | -- | -- |
| 18.03 | 0.198 | 15.5 | 1.18 | 0.715 | -0.78 | -- | 4.84 | 0.201 | 22 | 33.91 | 1009 | -- | -- |
| 19.42 | 0.205 | 15.5 | 0.57 | 0.678 | -0.121 | -- | -- | 0.324 | 22 | 33.78 | 9736 | -- | -- |
| 48.36 | 0.324 | 15.4 | 1.18 | -- | -0.759 | -- | 5.35 | 0.209 | -- | 34.4 | 1395 | -- | -- |
| 20.55 | 0.213 | 15.5 | 0.516 | 0.693 | -- | -0.237 | -- | 0.237 | 21.9 | -- | -- | -- | -- |
| 20.76 | 0.213 | 15.5 | 0.525 | 0.694 | -- | -- | -- | 0.237 | 21.9 | -- | -- | -- | -- |
| 46.73 | 0.318 | 15.5 | 0.617 | -- | -0.203 | -- | -- | 0.308 | -- | 33.9 | 7269 | -- | -- |
| 24.43 | 0.23 | 15.6 | -- | 0.687 | 0.274 | -- | -- | 0.075 | 21.9 | 25.8 | 47520 | -- | -- |
| 49.6 | 0.329 | 15.5 | 0.532 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 28.02 | 0.248 | 15.5 | -- | 0.696 | -- | -- | -- | 0.179 | 21.9 | -- | -- | -- | -- |
| 50.16 | 0.33 | 15.5 | -- | -- | 0.338 | -- | -- | 0.224 | -- | 35.38 | 47520 | -- | -- |
| 57.07 | 0.353 | 15.5 | -- | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.23 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 17.34 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 3 | 17.35 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 9 | 17.58 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 11 | 17.63 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 15 | 17.76 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 20 | 17.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 21 | 17.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 22 | 17.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 26 | 17.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 35 | 17.85 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 39 | 17.86 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 50 | 17.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 54 | 17.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 57 | 17.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 59 | 17.89 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 60 | 17.89 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 63 | 17.89 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 71 | 17.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 83 | 17.91 | wind | 3 | 43200 | < th | dose dependent | sin | 7 | NA |
| 93 | 17.92 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 118 | 17.92 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 119 | 17.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 133 | 17.94 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 146 | 17.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 158 | 17.96 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 160 | 17.96 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 176 | 17.97 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 22 |
| 180 | 17.97 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 181 | 17.98 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 196 | 17.99 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 204 | 17.99 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 205 | 17.99 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 215 | 18.00 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 218 | 18.00 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 223 | 18.00 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 228 | 18.00 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 234 | 18.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 258 | 18.01 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 280 | 18.03 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 298 | 18.04 | wind | 3 | 43200 | > th | dose independent | sin | 5 | NA |
| 299 | 18.04 | humidity | 50 | 1440 | < th | dose independent | sin | 12 | NA |
| 313 | 18.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 329 | 18.05 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 346 | 18.05 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 447 | 18.10 | humidity | 50 | 1440 | > th | dose independent | sin | 12 | NA |
| 460 | 18.10 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 518 | 18.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 551 | 18.14 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 552 | 18.14 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 553 | 18.14 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 606 | 18.15 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 607 | 18.15 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 631 | 18.15 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 657 | 18.17 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 741 | 18.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 742 | 18.18 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 798 | 18.19 | humidity | 50 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 868 | 18.22 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 878 | 18.23 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 912 | 18.23 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 20 |
| 952 | 18.24 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 14 |