BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0104100 Os01g0104100|AK072797
         (363 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54360.1  | chr3:20128570-20131581 REVERSE LENGTH=406          442   e-124

>AT3G54360.1 | chr3:20128570-20131581 REVERSE LENGTH=406
          Length = 405

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/327 (65%), Positives = 260/327 (79%), Gaps = 6/327 (1%)

Query: 40  EKTGNAN---TDPRVVPPKCPFGYDSNTFKLGPLSCMVCHALLHQSSKCTPCSHKFCKAC 96
           E+ GN N   TD   VP KCPFGYDS TFKLGP SCM+C ALL++SS+C PC+H FCK C
Sbjct: 73  EQEGNLNKDSTDSATVPAKCPFGYDSQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVC 132

Query: 97  ILRFKDCPLCGADIQGIEPDDELQGLVDRFIDGHARIKRSHAAG--DGEAASDNKTKVIY 154
           + RFKDCPLCGADI+ IE D+ LQ +VD+FI+GHARIKRS   G    E  +DNK KVIY
Sbjct: 133 LTRFKDCPLCGADIESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKEEVENDNK-KVIY 191

Query: 155 EDVSMERGAFLVQQAMRAFRAQNIESAKSRLSMCAQDIREELKSKQDNQELCSQLGAVLG 214
            DVSMERG+FLVQQAMRAF AQN ESAKSRL+MC +DIR++L  + +  ELCSQLGAVLG
Sbjct: 192 ADVSMERGSFLVQQAMRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLG 251

Query: 215 MLGDCCRTLGDAPSAITYYEESAEFLSKLPKKDLELVHTLSVSLNKIGDLRYYDGDLHSA 274
           MLGDC R +GD+ SA+ ++EES EFL KLP  DLE+ HTLSVSLNKIGDL+YYD DL +A
Sbjct: 252 MLGDCSRAMGDSSSAVKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAA 311

Query: 275 RSYYARSLDVRRSAAKEHSAVASQVIDVATSLAKVADVDRNLGNESMAVEGFEEAIKCLE 334
           RSYY R+L+VRR A K H    SQ++DVA SLAKVAD+DR L NE  A +GF+E ++ LE
Sbjct: 312 RSYYDRALNVRRDAMKHHPNAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMRLLE 371

Query: 335 NLKLESGEASLEQRRLSVLDFLQKQLD 361
           +LKL+S +++LEQRRLSVL+FL+KQ++
Sbjct: 372 SLKLDSEDSALEQRRLSVLEFLKKQVE 398



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,443,775
Number of extensions: 301272
Number of successful extensions: 1125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)