Os01g0103900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0103900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.66 | 0.499 | 3.88 | 0.27 | 0.899 | 0.769 | -0.302 | 1.01 | 0.599 | 1.16 | 20.7 | 1752 | -- | -- |
| 114.68 | 0.499 | 3.92 | 0.0514 | 0.906 | 0.727 | -0.234 | -- | 0.544 | 1.1 | 20.7 | 1819 | -- | -- |
| 112.53 | 0.494 | 3.88 | 0.333 | 0.897 | 0.7 | -- | 1.01 | 0.601 | 1.16 | 21.2 | 1850 | -- | -- |
| 114.7 | 0.499 | 3.92 | 0.0889 | 0.894 | 0.631 | -- | -- | 0.55 | 1.16 | 21.3 | 1913 | -- | -- |
| 154.45 | 0.579 | 3.88 | 0.296 | -- | 0.765 | -- | 0.728 | 0.558 | -- | 21.7 | 938 | -- | -- |
| 124.77 | 0.524 | 3.88 | 0.352 | 0.9 | -- | -0.298 | -- | 0.715 | 1.1 | -- | -- | -- | -- |
| 125.14 | 0.524 | 3.88 | 0.363 | 0.9 | -- | -- | -- | 0.717 | 1.07 | -- | -- | -- | -- |
| 155.25 | 0.58 | 3.91 | 0.0961 | -- | 0.774 | -- | -- | 0.519 | -- | 21.36 | 966 | -- | -- |
| 114.75 | 0.499 | 3.92 | -- | 0.878 | 0.658 | -- | -- | 0.524 | 1.18 | 21.2 | 2040 | -- | -- |
| 175.47 | 0.619 | 3.86 | 0.397 | -- | -- | -- | -- | 0.734 | -- | -- | -- | -- | -- |
| 128.6 | 0.53 | 3.89 | -- | 0.906 | -- | -- | -- | 0.676 | 1.08 | -- | -- | -- | -- |
| 155.46 | 0.581 | 3.92 | -- | -- | 0.8 | -- | -- | 0.502 | -- | 21.35 | 970 | -- | -- |
| 179.63 | 0.626 | 3.87 | -- | -- | -- | -- | -- | 0.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 108.27 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 3 | 108.34 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 5 | 108.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 7 | 108.59 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 13 | 108.81 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 21 | 108.93 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 47 | 109.66 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 55 | 109.89 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 76 | 110.16 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 80 | 110.26 | wind | 1.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 102 | 110.57 | wind | 1.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 120 | 110.76 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 138 | 110.88 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 193 | 111.20 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 206 | 111.28 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 207 | 111.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 208 | 111.28 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 217 | 111.33 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 284 | 111.60 | wind | 3.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 291 | 111.64 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 327 | 111.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 331 | 111.77 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 365 | 111.90 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 368 | 111.91 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 370 | 111.91 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 11 |
| 376 | 111.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 381 | 111.94 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 383 | 111.95 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 386 | 111.95 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 419 | 112.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 437 | 112.11 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 461 | 112.17 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 475 | 112.20 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 14 |
| 541 | 112.34 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 548 | 112.36 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 587 | 112.43 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 591 | 112.43 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 593 | 112.43 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 614 | 112.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 635 | 112.51 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 652 | 112.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 668 | 112.57 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 676 | 112.58 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 17 |
| 758 | 112.72 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 765 | 112.72 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 793 | 112.77 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 3 | 14 |
| 809 | 112.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 829 | 112.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 892 | 112.93 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 896 | 112.93 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 912 | 112.96 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 3 | NA |
| 918 | 112.96 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 923 | 112.97 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 929 | 112.98 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 935 | 112.98 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 3 | NA |
| 948 | 112.99 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 967 | 113.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 970 | 113.02 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 971 | 113.02 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 982 | 113.03 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 3 | 14 |