BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0103900 Os01g0103900|AK069975
         (478 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07380.3  | chr5:2332527-2335736 FORWARD LENGTH=643            380   e-106

>AT5G07380.3 | chr5:2332527-2335736 FORWARD LENGTH=643
          Length = 642

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/483 (42%), Positives = 289/483 (59%), Gaps = 11/483 (2%)

Query: 1   MALLCFLLDMRNIPPPXXXXXXXXXXXXXXXYA-AIPSADLPDRLALCYV-HPAASSSPP 58
           M LLCF++D+RNI P                +A + P   L DR+ LCY+     S +  
Sbjct: 1   MVLLCFVVDLRNISPSLIGDLKQSFLKLSNLHAISSPVDSLTDRIGLCYILKDRISGNDQ 60

Query: 59  QLKVVYRPGEKFNLRDFHHAVNNLPLDAFRP--NQHGSLHTTGDVSLTNLFSNRAIYSWA 116
           QLK  Y P   F LRDFHHA+N+LPLDAF P  ++ G++ +  D+ L+++  +RA+YSW 
Sbjct: 61  QLKFAYTPTGNFCLRDFHHAINSLPLDAFVPEIDESGAI-SCRDLKLSSVLCDRALYSWG 119

Query: 117 TDDTSKKVIAL--CMSAQNTQALRRSLMDAAEQCITVEFVLLETGAAFVCDGVSENSNGF 174
             D  +KVI L  C         + +LM A ++C++VEF+L E   +++     E  N F
Sbjct: 120 GRDIMRKVIVLSSCFPEDMDSEAKNTLMAATDKCVSVEFLLFEKQESYL-SYTQEKINRF 178

Query: 175 IDTICDLENCVVRRYSPETQVLHGLVKRWXXXXXXXXXXALQAVFVFRVPIISTVNQISC 234
           +  + DL+NC  +   P+ + LHGL KRW          +LQA  +F+  ++ +VN++ C
Sbjct: 179 LRCLSDLDNCSFQTCIPDGKSLHGLEKRWLQELKDDTGESLQAQIIFKSNLVGSVNKVFC 238

Query: 235 SMYASANHIIDGFPSCQICRCHGRPI-DLANTNKAKWMCPITSRQLTASDVTDTAVKIGE 293
           ++ A+ N I+DGF  CQ CRCHG P+ D       K  C +T+ +L   DV + +VK+G 
Sbjct: 239 NITAATNQIVDGFIPCQTCRCHGIPLQDSVEKPTEKLKCSVTNHELGKYDVIENSVKVGN 298

Query: 294 QTVLFLPDXXXXXXXXXXXXXXXFDVIERTNLASLNEGLIIGTPHIVIPSSNDVEVALDD 353
           +T LFLP                F+VIERTNL SL+EGL++G P+IV PS+      +D 
Sbjct: 299 RTTLFLPTIHSLQKLHPVSSQVDFNVIERTNLTSLSEGLLLGIPYIVSPSTCHETEEMDQ 358

Query: 354 ECSDQNTQLFYGLCETLFKLDQGLVCSSKCNTETMKIGSLECYYLLQPSEKGPMLLRRLA 413
              D NTQ+F GLC  L+ +DQGLVCSS CN +TM+     CYY+LQPSEKGPMLLRRLA
Sbjct: 359 --PDLNTQIFQGLCGALYSMDQGLVCSSNCNLDTMRAVEFHCYYVLQPSEKGPMLLRRLA 416

Query: 414 GSEEILPLPVVSRPCNSTGTKEVQNLIETSLSKIVLKDYNPLQHERGFHSRLNCLVKDSL 473
           GSEE+LP+  VS+   S+  +E++  ++ +L +I   +YNPL H RGFH +LN +VK+SL
Sbjct: 417 GSEEVLPICNVSQFAESSIPREIEISVKGALLEIESTNYNPLIHNRGFHQKLNLIVKESL 476

Query: 474 QFG 476
           QFG
Sbjct: 477 QFG 479



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,572,671
Number of extensions: 370558
Number of successful extensions: 701
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 376
Effective length of database: 8,310,137
Effective search space: 3124611512
Effective search space used: 3124611512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)