Os01g0101300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0101300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.85 | 0.435 | 9.87 | 1.59 | 1 | 0.744 | -0.459 | 0.246 | 0.269 | 9.14 | 24.8 | 342 | -- | -- |
| 86.09 | 0.432 | 9.87 | 1.64 | 1.01 | 0.752 | -0.476 | -- | 0.272 | 9.16 | 24.8 | 343 | -- | -- |
| 86.57 | 0.433 | 9.87 | 1.6 | 0.997 | 0.752 | -- | 0.181 | 0.273 | 9.16 | 24.8 | 344 | -- | -- |
| 86.64 | 0.434 | 9.87 | 1.65 | 0.998 | 0.754 | -- | -- | 0.29 | 9.17 | 24.8 | 343 | -- | -- |
| 118.85 | 0.508 | 9.84 | 1.96 | -- | 1.35 | -- | -0.523 | 0.499 | -- | 25.23 | 585 | -- | -- |
| 113.8 | 0.5 | 9.94 | 1.43 | 1.31 | -- | -0.426 | -- | -0.0673 | 8.09 | -- | -- | -- | -- |
| 114.35 | 0.501 | 9.94 | 1.41 | 1.32 | -- | -- | -- | -0.067 | 8.09 | -- | -- | -- | -- |
| 119.36 | 0.509 | 9.86 | 1.81 | -- | 1.33 | -- | -- | 0.452 | -- | 25.28 | 583 | -- | -- |
| 155.79 | 0.581 | 9.92 | -- | 1.15 | 0.6 | -- | -- | 0.0562 | 8.8 | 25 | 332 | -- | -- |
| 209.24 | 0.676 | 9.97 | 1.43 | -- | -- | -- | -- | -0.0509 | -- | -- | -- | -- | -- |
| 167.02 | 0.605 | 9.97 | -- | 1.32 | -- | -- | -- | -0.224 | 8.02 | -- | -- | -- | -- |
| 202.13 | 0.662 | 9.92 | -- | -- | 1.04 | -- | -- | 0.154 | -- | 25.6 | 544 | -- | -- |
| 262.82 | 0.757 | 10 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.77 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |
| 3 | 86.95 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 15 | 87.52 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 16 | 87.52 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 18 | 87.64 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 21 | 87.65 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 19 |
| 36 | 88.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 37 | 88.08 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 23 |
| 42 | 88.16 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 44 | 88.18 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 51 | 88.38 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 58 | 88.54 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 69 | 88.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 77 | 88.66 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 80 | 88.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 92 | 88.82 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 96 | 88.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 119 | 89.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 132 | 89.11 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 138 | 89.18 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 197 | 89.50 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 198 | 89.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 261 | 89.91 | temperature | 25 | 270 | > th | dose independent | sin | 10 | NA |
| 292 | 90.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 320 | 90.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 332 | 90.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 360 | 90.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 382 | 90.50 | temperature | 25 | 1440 | > th | dose independent | sin | 12 | NA |
| 464 | 90.84 | temperature | 25 | 1440 | < th | dose independent | sin | 12 | NA |
| 493 | 90.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 512 | 91.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 522 | 91.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 540 | 91.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 557 | 91.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 583 | 91.32 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 636 | 91.45 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 650 | 91.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 656 | 91.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 663 | 91.53 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 775 | 91.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 804 | 91.87 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 23 |