BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0101300 Os01g0101300|Os01g0101300
         (407 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24880.1  | chr4:12808593-12811218 FORWARD LENGTH=418          481   e-136

>AT4G24880.1 | chr4:12808593-12811218 FORWARD LENGTH=418
          Length = 417

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 214/332 (64%), Positives = 272/332 (81%), Gaps = 1/332 (0%)

Query: 75  ASKLRGSDARRWFARQIMLPEWMADAPPHLATDWHVFARPAGKRCLVVSCNGITISRLRN 134
           AS+LRG +AR+WFA+Q+MLPEWM D P +L+ DW+V ARPAGKRC VVS +G T+SR+RN
Sbjct: 84  ASRLRGPEARKWFAKQLMLPEWMIDVPDNLSQDWYVLARPAGKRCFVVSSDGTTVSRVRN 143

Query: 135 GSILHRFPSALPNGS-KRDISGPASSYSILDCIFHEPDETYYIIDMICWRGYSLYDCTAE 193
           GS LH FPSALP G+ K+  SGPA+SYSILDCIFHE D+TYY+IDM+CWRGYSLY+CT+E
Sbjct: 144 GSTLHLFPSALPGGARKKGASGPANSYSILDCIFHESDQTYYVIDMVCWRGYSLYECTSE 203

Query: 194 FRFFWVNSKLMETTAGDPPSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFYNK 253
           FRFFW+ SKL ET A DPPS YH++RFS VP Y C   GL +AY+GS PYV+DGLLFYNK
Sbjct: 204 FRFFWLQSKLAETGACDPPSVYHKFRFSVVPFYNCDQSGLHSAYTGSLPYVRDGLLFYNK 263

Query: 254 HAHYLAGITPLALVWKDEACSQYVIDTDSKGQVPSEQHIVLDLQEDGKLTTSDDPPVVFG 313
           HAHY  G TPL L+WKDE+CSQYVIDTD+ G+VP++QHIVL+LQE+GKL TSDDPPV F 
Sbjct: 264 HAHYHTGNTPLVLIWKDESCSQYVIDTDNNGEVPNQQHIVLELQEEGKLVTSDDPPVPFS 323

Query: 314 SLDNEFIQKSNLRPGNLLRFAVKDERVKLVDGKMEISELQFVGKPNRARAFADSHSKALF 373
            L+ +F+++S L  G+L+RFA+ D  +K VDG+ E ++LQ++G  NRARAFADS+SK +F
Sbjct: 324 CLNADFVKQSGLSSGSLIRFAIGDGGLKCVDGRFEKADLQYIGVSNRARAFADSYSKIMF 383

Query: 374 QYAARHAPLRIEDLVASIQSNNMELESTDVEM 405
           QY ARH+PL++EDL ++I   + + +  +VEM
Sbjct: 384 QYMARHSPLKVEDLASTISPEDQQDKPPEVEM 415



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,158,842
Number of extensions: 358887
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,337,553
Effective search space: 2551291218
Effective search space used: 2551291218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)