BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0206000 Os11g0206000|AK071032
         (83 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0206000  Conserved hypothetical protein                      172   3e-44
Os04g0330400  Hypothetical protein                                 77   3e-15

>Os11g0206000 Conserved hypothetical protein
          Length = 83

 Score =  172 bits (437), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MLQICNFLDMNCACFLCFVSAQPPQRRAGEIVSLLQNRLNMNITFKELQGHPASSAGEGD 60
          MLQICNFLDMNCACFLCFVSAQPPQRRAGEIVSLLQNRLNMNITFKELQGHPASSAGEGD
Sbjct: 1  MLQICNFLDMNCACFLCFVSAQPPQRRAGEIVSLLQNRLNMNITFKELQGHPASSAGEGD 60

Query: 61 QPVLQAWTAVGDCGRHGGAVLSL 83
          QPVLQAWTAVGDCGRHGGAVLSL
Sbjct: 61 QPVLQAWTAVGDCGRHGGAVLSL 83



>Os04g0330400 Hypothetical protein
          Length = 290

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 50/84 (59%), Gaps = 28/84 (33%)

Query: 1   MLQICNFLDMNCACFLCFVSAQPPQRRAGEIVSLLQNRLNMNITFKEL------------ 48
           ++ I NFL+           +QPPQRRAGEIVSLLQNRLNMNITFKEL            
Sbjct: 106 IMAIRNFLE-------GPRPSQPPQRRAGEIVSLLQNRLNMNITFKELQDGPAAAQPPLG 158

Query: 49  ---------QGHPASSAGEGDQPV 63
                    QGHPASSAGEGDQP+
Sbjct: 159 PHALTGHHQQGHPASSAGEGDQPL 182



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,333,607
Number of extensions: 114937
Number of successful extensions: 401
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 17,035,801
Length adjustment: 53
Effective length of query: 30
Effective length of database: 14,268,459
Effective search space: 428053770
Effective search space used: 428053770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)