BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0183200 Os11g0183200|AK069881
         (153 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0183200  Conserved hypothetical protein                      187   2e-48
Os12g0562000  Hypothetical protein                                106   6e-24
Os06g0282900  Conserved hypothetical protein                       68   3e-12

>Os11g0183200 Conserved hypothetical protein
          Length = 153

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 103/153 (67%)

Query: 1   TATATSQIGRAKXXXXXXXXXXXXXXXADWFPGCASLGNIFFRRRRSLSTTGAPAPLLSL 60
           TATATSQIGRAK               ADWFPGCASLGNIFFRRRRSLSTTGAPAPLLSL
Sbjct: 1   TATATSQIGRAKLLPSPFRPPRLFPSLADWFPGCASLGNIFFRRRRSLSTTGAPAPLLSL 60

Query: 61  SSVFGWXXXXXXXXXXXXXXXXXXXXNLPDRVYFILDGNLWYFEHRIIRLPISDLFAXXX 120
           SSVFGW                    NLPDRVYFILDGNLWYFEHRIIRLPISDLFA   
Sbjct: 61  SSVFGWKKKQKERGYGRKKKRKRKEKNLPDRVYFILDGNLWYFEHRIIRLPISDLFALEQ 120

Query: 121 XXXXXXXXXXXXIRCRTSSSRAVLRSTMARRRR 153
                       IRCRTSSSRAVLRSTMARRRR
Sbjct: 121 GRKKGGREGLLKIRCRTSSSRAVLRSTMARRRR 153



>Os12g0562000 Hypothetical protein
          Length = 117

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 58/85 (68%)

Query: 33  GCASLGNIFFRRRRSLSTTGAPAPLLSLSSVFGWXXXXXXXXXXXXXXXXXXXXNLPDRV 92
           GCASLGN+F R+RR    T APAPLLSL SVFGW                    NLPDRV
Sbjct: 27  GCASLGNMFPRQRRRSPPTRAPAPLLSLFSVFGWKKKQKERGYGRKKKRKRKEKNLPDRV 86

Query: 93  YFILDGNLWYFEHRIIRLPISDLFA 117
           YFILDGN+W+FEHRIIRLPISDLFA
Sbjct: 87  YFILDGNMWHFEHRIIRLPISDLFA 111



>Os06g0282900 Conserved hypothetical protein
          Length = 105

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 87  NLPDRVYFILDGNLWYFEHRIIRLPISDLFA 117
           NLPDRVYFILDGNLWYF+HRIIRLPISDLFA
Sbjct: 64  NLPDRVYFILDGNLWYFKHRIIRLPISDLFA 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,149,382
Number of extensions: 73411
Number of successful extensions: 202
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)