BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0168100 Os11g0168100|J075190O20
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0168100  Similar to Syntaxin 61 (AtSYP61) (Osmotic stes...   252   6e-68
Os01g0963300  Similar to Syntaxin 61 (AtSYP61) (Osmotic stes...   170   4e-43

>Os11g0168100 Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
          Length = 141

 Score =  252 bits (643), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   VVSIRRCVEAGKQKSAFGHSVNPSELVRSKQHIAQDNDDFIASESDQQMLLIKRQDEELD 60
           VVSIRRCVEAGKQKSAFGHSVNPSELVRSKQHIAQDNDDFIASESDQQMLLIKRQDEELD
Sbjct: 1   VVSIRRCVEAGKQKSAFGHSVNPSELVRSKQHIAQDNDDFIASESDQQMLLIKRQDEELD 60

Query: 61  ELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAMVLKKASLKGQ 120
           ELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAMVLKKASLKGQ
Sbjct: 61  ELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAMVLKKASLKGQ 120

Query: 121 IMMIA 125
           IMMIA
Sbjct: 121 IMMIA 125



>Os01g0963300 Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
          Length = 234

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 102/124 (82%), Gaps = 1/124 (0%)

Query: 1   VVSIRRCVEAGKQKSAFGHSVNPSELVRSKQHIAQDNDDFIASESDQQMLLIKRQDEELD 60
           V ++RR VE GK  S F    +     RS  + AQDNDDFIASESD+Q+LL+++QDEELD
Sbjct: 95  VAAVRRSVEKGKSNSTFSAHQDMG-TSRSNHYTAQDNDDFIASESDRQLLLMRQQDEELD 153

Query: 61  ELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAMVLKKASLKGQ 120
           ELS SVQRIGGVGLTIH+EL GQER+L +LSL+METT+NRLDFVQKRVAMV+KKA +KGQ
Sbjct: 154 ELSESVQRIGGVGLTIHEELSGQERILNDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQ 213

Query: 121 IMMI 124
           IM+I
Sbjct: 214 IMLI 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,353,576
Number of extensions: 114197
Number of successful extensions: 496
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)