BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0568900 Os09g0568900|AB029060
         (123 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0568900  F1F0-ATPase inhibitor protein                       222   6e-59
Os08g0559000  Conserved hypothetical protein                      116   4e-27

>Os09g0568900 F1F0-ATPase inhibitor protein
          Length = 123

 Score =  222 bits (565), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 111/123 (90%)

Query: 1   MEXXXXXXXXXXXXFVQRRLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGE 60
           ME            FVQRRLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGE
Sbjct: 1   MEAAARAPSRAAARFVQRRLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGE 60

Query: 61  QASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSED 120
           QASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSED
Sbjct: 61  QASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSED 120

Query: 121 IVD 123
           IVD
Sbjct: 121 IVD 123



>Os08g0559000 Conserved hypothetical protein
          Length = 123

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 78/111 (70%), Gaps = 9/111 (8%)

Query: 15  FVQRRLFSSGGKVLGEEEKAAENVYIKKMEHEKLEKLAHKGPNPGEQASTAGAAANAVKT 74
              RRL SSGGKVLGEE KAAEN+YIKKME EKLEKLA +GP+PGEQ S+  AA   VK 
Sbjct: 20  LAPRRLLSSGGKVLGEE-KAAENIYIKKMEQEKLEKLARQGPSPGEQGSSTPAA--DVKA 76

Query: 75  GSGSTESRSAGVSTDKNRNYAVLAGTVAAL--SGLGWYLLSKPKKSEDIVD 123
             G T    AG ST KN+NY ++AG V  L  S + WY LSKP+KSE++ +
Sbjct: 77  EGGPT----AGASTVKNKNYTLIAGAVGVLGASAIAWYRLSKPEKSEEVAN 123



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.124    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,746,751
Number of extensions: 141986
Number of successful extensions: 651
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 149 (62.0 bits)