BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0506800 Os09g0506800|AK064028
         (609 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0506800  Similar to Meiotic asynaptic mutant 1              1235   0.0  
Os03g0202800                                                      486   e-137
Os12g0606600  DNA-binding HORMA domain containing protein         263   4e-70
Os03g0202900                                                      259   6e-69

>Os09g0506800 Similar to Meiotic asynaptic mutant 1
          Length = 609

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/594 (100%), Positives = 594/594 (100%)

Query: 1   MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLM 60
           MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLM
Sbjct: 1   MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLM 60

Query: 61  PMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVA 120
           PMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVA
Sbjct: 61  PMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVA 120

Query: 121 MNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLY 180
           MNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLY
Sbjct: 121 MNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLY 180

Query: 181 YDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNN 240
           YDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNN
Sbjct: 181 YDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNN 240

Query: 241 VNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVAPNDGTCKGQNGTISEDDTQDPVHE 300
           VNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVAPNDGTCKGQNGTISEDDTQDPVHE
Sbjct: 241 VNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVAPNDGTCKGQNGTISEDDTQDPVHE 300

Query: 301 EELTAQVREWICSRDTESLEVSDVLVNFPDISMEMVEDIMERLLKDGLLSRAKKDSYSVN 360
           EELTAQVREWICSRDTESLEVSDVLVNFPDISMEMVEDIMERLLKDGLLSRAKKDSYSVN
Sbjct: 301 EELTAQVREWICSRDTESLEVSDVLVNFPDISMEMVEDIMERLLKDGLLSRAKKDSYSVN 360

Query: 361 KIADPTTPHIKKEVIMQNVSPTEGTKNSNGDLMYMKALYHALPMDYVSVGKLHGKLDGEA 420
           KIADPTTPHIKKEVIMQNVSPTEGTKNSNGDLMYMKALYHALPMDYVSVGKLHGKLDGEA
Sbjct: 361 KIADPTTPHIKKEVIMQNVSPTEGTKNSNGDLMYMKALYHALPMDYVSVGKLHGKLDGEA 420

Query: 421 SQNMVRKLIEKMVQDGYVKNSANRRLGKAVIHSEVTNRKLLEIKKILEVDIAEQMAIDTN 480
           SQNMVRKLIEKMVQDGYVKNSANRRLGKAVIHSEVTNRKLLEIKKILEVDIAEQMAIDTN
Sbjct: 421 SQNMVRKLIEKMVQDGYVKNSANRRLGKAVIHSEVTNRKLLEIKKILEVDIAEQMAIDTN 480

Query: 481 AEPGEPERKDHLSGHEMRDGSTMGCLQSVGSDLTRTRELPEPQQNVSMQSGQEASTVDKD 540
           AEPGEPERKDHLSGHEMRDGSTMGCLQSVGSDLTRTRELPEPQQNVSMQSGQEASTVDKD
Sbjct: 481 AEPGEPERKDHLSGHEMRDGSTMGCLQSVGSDLTRTRELPEPQQNVSMQSGQEASTVDKD 540

Query: 541 PSRTPTSVREASVCSLESGVLGQKVRKSLAGAGGTQCSQDKRFRKASTVKEPIL 594
           PSRTPTSVREASVCSLESGVLGQKVRKSLAGAGGTQCSQDKRFRKASTVKEPIL
Sbjct: 541 PSRTPTSVREASVCSLESGVLGQKVRKSLAGAGGTQCSQDKRFRKASTVKEPIL 594



>Os03g0202800 
          Length = 301

 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/245 (94%), Positives = 237/245 (96%)

Query: 20  LTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLMPMDTESRRLIDWMEKGVYD 79
           +TRNLLRIA YNISYIRGLFPEKYFNDKSVPA EMKIKKL+PMD  SRRLI+WMEKGVYD
Sbjct: 1   MTRNLLRIARYNISYIRGLFPEKYFNDKSVPAQEMKIKKLIPMDAASRRLINWMEKGVYD 60

Query: 80  ALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVAMNLSRTGSKKNSATFKSNA 139
           ALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPN SGDEVA+NLSRT SKKNSATFK NA
Sbjct: 61  ALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNMSGDEVAINLSRTESKKNSATFKPNA 120

Query: 140 AEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLYYDDVTPEDYEPPFFKCCAD 199
           AEVTPDQMRSSACKMIRTLVSLMRTLDQ+PEERTILMKLLYYDDVTPEDYEPPFFKCCA+
Sbjct: 121 AEVTPDQMRSSACKMIRTLVSLMRTLDQIPEERTILMKLLYYDDVTPEDYEPPFFKCCAN 180

Query: 200 NEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNNVNSEDDNMSLDNESDQDND 259
           NEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNNVNSEDDNMSLDNESDQDND
Sbjct: 181 NEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNNVNSEDDNMSLDNESDQDND 240

Query: 260 FSDTE 264
           FSD E
Sbjct: 241 FSDNE 245



>Os12g0606600 DNA-binding HORMA domain containing protein
          Length = 631

 Score =  263 bits (671), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 191/305 (62%), Gaps = 35/305 (11%)

Query: 10  AEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYFNDKSVPALEMKIKKLMPM-DTESRR 68
            E  E D +   R LLRIAIYNI Y+ G FP+ YF+D  V   +M IK+L+P+ D+ESRR
Sbjct: 14  GEAREGDPVDKIRRLLRIAIYNIGYVEGFFPDAYFSDIVVREDDMVIKQLVPIVDSESRR 73

Query: 69  L---IDWMEKGVYDALQKKYLKTLLFCICEKEEGPMIEEYAFSFSYPNTSGDEVAMNLSR 125
           L   ID  E  + DAL+KKYLKTL+F ICEK EGP+++E+ FSFSYP+T  DEV M ++R
Sbjct: 74  LMNLIDEAEACLCDALKKKYLKTLVFSICEKYEGPVLQEFIFSFSYPSTGPDEVVMMMTR 133

Query: 126 TGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVSLMRTLDQMPEERTILMKLLYYDDVT 185
           TGSK  +  F+++A +VTP+QMRSSACKMIR +V   RT   + EE  I MKL +Y+D T
Sbjct: 134 TGSKVITK-FEASAVKVTPNQMRSSACKMIRLIVQQTRTY-PVQEEHAIEMKLSFYEDTT 191

Query: 186 PEDYEPPFFKCCADNEAINIWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCDDNNVNSED 245
           PEDYEPPF K C ++E + IWN N LKMEVGN+N+KH+VL LKVKS    C ++ V    
Sbjct: 192 PEDYEPPFPKYCVNSEDVAIWNNNILKMEVGNINNKHVVLTLKVKSAQSYCKNSIV---- 247

Query: 246 DNMSLDNESDQDNDFSDTEVRPSEAERYIVAPNDGTCKGQNGTISEDDTQDPVHEEELTA 305
                       +D SD E+   E   Y  APN             DDT++  H   L +
Sbjct: 248 ------------DDCSDYEMCECETYGYTSAPN-------------DDTEEDYHTGMLAS 282

Query: 306 QVREW 310
            ++ W
Sbjct: 283 PIKAW 287



>Os03g0202900 
          Length = 165

 Score =  259 bits (661), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 144/207 (69%), Gaps = 56/207 (27%)

Query: 335 MVEDIMERLLKDGLLSRAKKDSYSVNKIADPTTPHIKKEVIMQNVSPTEGTKNSNGDLMY 394
           M EDIMERLLKDGLLSRAK DSYSVNK                                 
Sbjct: 1   MAEDIMERLLKDGLLSRAKNDSYSVNK--------------------------------- 27

Query: 395 MKALYHALPMDYVSVGKLHGKLDGEASQNMVRKLIEKMVQDGYVKNSANRRLGKAVIHSE 454
             ALYHALPMDYVSVGKLHGKLDGEASQNMV K+                     VIHSE
Sbjct: 28  --ALYHALPMDYVSVGKLHGKLDGEASQNMVCKV---------------------VIHSE 64

Query: 455 VTNRKLLEIKKILEVDIAEQMAIDTNAEPGEPERKDHLSGHEMRDGSTMGCLQSVGSDLT 514
           VTNRKLLEIK+ILE+DIAEQMAIDTNAE GEPERKDHLSGHEMRDGSTMGCLQSVGSDLT
Sbjct: 65  VTNRKLLEIKRILEIDIAEQMAIDTNAEAGEPERKDHLSGHEMRDGSTMGCLQSVGSDLT 124

Query: 515 RTRELPEPQQNVSMQSGQEASTVDKDP 541
           RTRELPEPQQN+SMQS Q ASTVDK P
Sbjct: 125 RTRELPEPQQNLSMQSEQGASTVDKGP 151



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,580,492
Number of extensions: 827149
Number of successful extensions: 2309
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2305
Number of HSP's successfully gapped: 4
Length of query: 609
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 502
Effective length of database: 11,448,903
Effective search space: 5747349306
Effective search space used: 5747349306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)