BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0530600 Os08g0530600|AK064897
         (94 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0530600  Hypothetical protein                                111   1e-25
Os01g0729200  Hypothetical protein                                107   2e-24

>Os08g0530600 Hypothetical protein
          Length = 94

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 56/94 (59%)

Query: 1  MISPTPQHAILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLXXXXXXXXXX 60
          MISPTPQHAILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWL          
Sbjct: 1  MISPTPQHAILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLAAGRTRVRSG 60

Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGRSSS 94
                                      CGRSSS
Sbjct: 61 GAAAGAVAACARQQVAGADARRQRRRAACGRSSS 94



>Os01g0729200 Hypothetical protein
          Length = 94

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 55/94 (58%)

Query: 1  MISPTPQHAILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLXXXXXXXXXX 60
          MISPTPQHAILCF LSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWL          
Sbjct: 1  MISPTPQHAILCFPLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLAAGRTRVRSG 60

Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGRSSS 94
                                      CGRSSS
Sbjct: 61 GAAAGAVAACARQQVAGGDARRQRRRAACGRSSS 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.140    0.547 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,924,310
Number of extensions: 115390
Number of successful extensions: 553
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)