BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0467300 Os08g0467300|AK105541
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0467300  Epsin, N-terminal domain containing protein         608   e-174

>Os08g0467300 Epsin, N-terminal domain containing protein
          Length = 396

 Score =  608 bits (1568), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/377 (82%), Positives = 311/377 (82%)

Query: 20  SLYLTXXXXXXXXXXXXXXXXXXXXXXXXXIRATSHDERSVDYRSAARVFALARASPAVL 79
           SLYLT                         IRATSHDERSVDYRSAARVFALARASPAVL
Sbjct: 20  SLYLTRVAALRPASPAAAAALRNAELEAVVIRATSHDERSVDYRSAARVFALARASPAVL 79

Query: 80  QPLMWALARRAGRTRCWAVXXXXXXXXXXXXXRSDLAPRAARLGRVPFDLADFRDRSSSP 139
           QPLMWALARRAGRTRCWAV             RSDLAPRAARLGRVPFDLADFRDRSSSP
Sbjct: 80  QPLMWALARRAGRTRCWAVALKALMLAHGLLLRSDLAPRAARLGRVPFDLADFRDRSSSP 139

Query: 140 TKTSGFSAFVRAYFHFLDTRSLFXXXXXXXXXXXXXXXXXXXXXGVSRLQHLLDLLMQIR 199
           TKTSGFSAFVRAYFHFLDTRSLF                     GVSRLQHLLDLLMQIR
Sbjct: 140 TKTSGFSAFVRAYFHFLDTRSLFAAQDMDNNDDDDADDEDARLDGVSRLQHLLDLLMQIR 199

Query: 200 PYGDGMEQGLILEAMDCVVIEIFEVYSQICTGIARFLVGVLGSAPTTPRPRPGETMAAAR 259
           PYGDGMEQGLILEAMDCVVIEIFEVYSQICTGIARFLVGVLGSAPTTPRPRPGETMAAAR
Sbjct: 200 PYGDGMEQGLILEAMDCVVIEIFEVYSQICTGIARFLVGVLGSAPTTPRPRPGETMAAAR 259

Query: 260 RRRGLQGMRVLRKASEQSAQLTSYFELCRSLGVLNAAEFPAVERVPDDDIRDLEKLIMSH 319
           RRRGLQGMRVLRKASEQSAQLTSYFELCRSLGVLNAAEFPAVERVPDDDIRDLEKLIMSH
Sbjct: 260 RRRGLQGMRVLRKASEQSAQLTSYFELCRSLGVLNAAEFPAVERVPDDDIRDLEKLIMSH 319

Query: 320 VVEDRGKEKVSEEKALVAVEDTGVASRTVVTREWVVFXXXXXXXGVAGARQGHFGHYVNP 379
           VVEDRGKEKVSEEKALVAVEDTGVASRTVVTREWVVF       GVAGARQGHFGHYVNP
Sbjct: 320 VVEDRGKEKVSEEKALVAVEDTGVASRTVVTREWVVFDDDDEDDGVAGARQGHFGHYVNP 379

Query: 380 FLGAPWEAVTGSGNLLV 396
           FLGAPWEAVTGSGNLLV
Sbjct: 380 FLGAPWEAVTGSGNLLV 396



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,461,583
Number of extensions: 376564
Number of successful extensions: 1718
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1722
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)