BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0608300 Os07g0608300|AK073927
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0608300 Esterase/lipase/thioesterase domain containing... 631 0.0
Os12g0286600 Esterase/lipase/thioesterase domain containing... 68 1e-11
>Os07g0608300 Esterase/lipase/thioesterase domain containing protein
Length = 320
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/320 (95%), Positives = 304/320 (95%)
Query: 1 MVGWLKALCYXXXXXXXXXXXXXXXXQERLVYVPVLPGIARAYPITPDRLRLIYEDVWLR 60
MVGWLKALCY QERLVYVPVLPGIARAYPITPDRLRLIYEDVWLR
Sbjct: 1 MVGWLKALCYGAGGMAVVGLAALVALQERLVYVPVLPGIARAYPITPDRLRLIYEDVWLR 60
Query: 61 AADGVRLHSWFIRHSPTCRGPTILFFQENAGNIAHRLDFVRLMMQRLQCNVFMLSYRGYG 120
AADGVRLHSWFIRHSPTCRGPTILFFQENAGNIAHRLDFVRLMMQRLQCNVFMLSYRGYG
Sbjct: 61 AADGVRLHSWFIRHSPTCRGPTILFFQENAGNIAHRLDFVRLMMQRLQCNVFMLSYRGYG 120
Query: 121 ESDGYPSQKGIINDAQAALDHLVQRKDIDTSRIVVFGRSLGGAVGAVLAKNNPGKVSALI 180
ESDGYPSQKGIINDAQAALDHLVQRKDIDTSRIVVFGRSLGGAVGAVLAKNNPGKVSALI
Sbjct: 121 ESDGYPSQKGIINDAQAALDHLVQRKDIDTSRIVVFGRSLGGAVGAVLAKNNPGKVSALI 180
Query: 181 LENTFTSILDMAGIMLPFLRWFIGGSSSKGPKLLNCVVRSPWSTLDIIAEVKQPIIFLSG 240
LENTFTSILDMAGIMLPFLRWFIGGSSSKGPKLLNCVVRSPWSTLDIIAEVKQPIIFLSG
Sbjct: 181 LENTFTSILDMAGIMLPFLRWFIGGSSSKGPKLLNCVVRSPWSTLDIIAEVKQPIIFLSG 240
Query: 241 LQDELVPPSHMRLLYEKAFEHNKNCRFVDFPNGMHMDTWNSGGDRYWRTIQLFLDQYAPE 300
LQDELVPPSHMRLLYEKAFEHNKNCRFVDFPNGMHMDTWNSGGDRYWRTIQLFLDQYAPE
Sbjct: 241 LQDELVPPSHMRLLYEKAFEHNKNCRFVDFPNGMHMDTWNSGGDRYWRTIQLFLDQYAPE 300
Query: 301 VQSCNTSCKSEIANDDEAEE 320
VQSCNTSCKSEIANDDEAEE
Sbjct: 301 VQSCNTSCKSEIANDDEAEE 320
>Os12g0286600 Esterase/lipase/thioesterase domain containing protein
Length = 377
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 55 EDVWLRAADGVRLHSWFIRHSPTCRGPTILFFQENAGNIAHRLDFVRLMMQRLQCNVFML 114
E + LR G + + ++RH T+L+ NA ++ H + L+ NV
Sbjct: 45 EVLRLRTRRGNTVAAVYVRHPDA--ATTLLYSHGNAADLGHLYQLFLHLSFNLRVNVLGY 102
Query: 115 SYRGYGESDGYPSQKGIINDAQAALDHLVQRKDIDTSRIVVFGRSLGGAVGAVLAKNNPG 174
Y GYG+S G PS+ D +AA L++ I+++G+S+G LA +
Sbjct: 103 DYSGYGQSSGKPSEHNTYADIEAAYKCLIENFGAKEEEIILYGQSVGSGPTVDLA-SRLH 161
Query: 175 KVSALILENTFTSILDMAGIMLPFLR--WFIGGSSSKGPKLLNCVVRSPWSTLDIIAEVK 232
++ A++L + IL +M P R WF + +D I +V
Sbjct: 162 RLRAVVLH---SPILSGLRVMYPVKRTYWF-----------------DIYKNIDKIPQVT 201
Query: 233 QPIIFLSGLQDELVPPSHMRLLYE 256
P++ + G DE+V SH + L+E
Sbjct: 202 CPVLIIHGTADEVVDWSHGKQLWE 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,089,725
Number of extensions: 451235
Number of successful extensions: 821
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)