BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0576600 Os07g0576600|Os07g0576600
         (196 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0576600  Conserved hypothetical protein                      150   4e-37
Os05g0550100                                                      124   3e-29

>Os07g0576600 Conserved hypothetical protein
          Length = 196

 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 95/171 (55%)

Query: 26  RIVLESIKEEGLRFTTSIERTRRETARVTDEIPRLTEQEKAASAQARSRLEAVTAADERA 85
           RIVLESIKEEGLRFTTSIERTRRETARVTDEIPRLTEQEKAASAQARSRLEAVTAADERA
Sbjct: 26  RIVLESIKEEGLRFTTSIERTRRETARVTDEIPRLTEQEKAASAQARSRLEAVTAADERA 85

Query: 86  DETISKLAAILRQXXXXXXXXXXXXXXXXXXNRRAMSXXXXXXXXXXXXXXXXXXSVREL 145
           DETISKLAAILRQ                  NRRAMS                  SVREL
Sbjct: 86  DETISKLAAILRQLEDDAEAAEKEKTLTETENRRAMSDAENIDAEIAAAEQRIRESVREL 145

Query: 146 GXXXXXXXXXXXXXXXIVEXXXXXXXXXXXXXXXXXXXXXXXXXPGSSTST 196
           G               IVE                         PGSSTST
Sbjct: 146 GAARASEAAATARLKAIVESATLATAAAATSRSSSSRNVTNSRSPGSSTST 196



>Os05g0550100 
          Length = 788

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 80/131 (61%), Gaps = 10/131 (7%)

Query: 26  RIVLESIKEEGLRFTTSIERTRRETARVTDEIPRLTEQEKAASAQ----------ARSRL 75
           RI LESIK EGLRFT SIERTRRETARVTDEI RLTEQEKAASA           ARSRL
Sbjct: 491 RIELESIKAEGLRFTASIERTRRETARVTDEIRRLTEQEKAASAHVQQLNAKLLKARSRL 550

Query: 76  EAVTAADERADETISKLAAILRQXXXXXXXXXXXXXXXXXXNRRAMSXXXXXXXXXXXXX 135
           EAVTAADERADETISKLAAILRQ                  NRRAMS             
Sbjct: 551 EAVTAADERADETISKLAAILRQLEDDAAAAEKEKTLADTENRRAMSDAENIDAEIAAAE 610

Query: 136 XXXXXSVRELG 146
                SVRELG
Sbjct: 611 KRIRESVRELG 621



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.122    0.298 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,901,020
Number of extensions: 42549
Number of successful extensions: 282
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)