BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0646500 Os06g0646500|AK071267
         (225 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0646500  Similar to ATP synthase delta chain, mitochond...   426   e-120
AK101953                                                          422   e-119
D10422                                                            115   3e-26

>Os06g0646500 Similar to ATP synthase delta chain, mitochondrial precursor (EC
           3.6.3.14) (Oligomycin sensitivity conferral protein)
           (OSCP)
          Length = 225

 Score =  426 bits (1095), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/225 (94%), Positives = 213/225 (94%)

Query: 1   MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK 60
           MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK
Sbjct: 1   MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK 60

Query: 61  ANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA 120
           ANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA
Sbjct: 61  ANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA 120

Query: 121 VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIXXXXXXXXXXXXTLQDILGKNKT 180
           VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVI            TLQDILGKNKT
Sbjct: 121 VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKT 180

Query: 181 ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI 225
           ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI
Sbjct: 181 ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI 225



>AK101953 
          Length = 225

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/225 (94%), Positives = 212/225 (94%)

Query: 1   MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK 60
           MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK
Sbjct: 1   MAARHLRSGLPLLRAHLSQEGSRGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK 60

Query: 61  ANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA 120
           ANLLDKVETEIRDVVEASKKSPLFSQ IKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA
Sbjct: 61  ANLLDKVETEIRDVVEASKKSPLFSQSIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLA 120

Query: 121 VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIXXXXXXXXXXXXTLQDILGKNKT 180
           VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVI            TLQDILGKNKT
Sbjct: 121 VLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKT 180

Query: 181 ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI 225
           ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI
Sbjct: 181 ILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQPLDI 225



>D10422 
          Length = 81

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 59/79 (74%)

Query: 102 ITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIXXXX 161
           ITEI AEAGFSDV KNFLAVL DNGRLKHID IAERFVDL MAHKGEVK LVRTVI    
Sbjct: 1   ITEILAEAGFSDVXKNFLAVLXDNGRLKHIDXIAERFVDLXMAHKGEVKXLVRTVIPLPE 60

Query: 162 XXXXXXXXTLQDILGKNKT 180
                   T QDILGKN T
Sbjct: 61  KEEKALKETFQDILGKNPT 79



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,075,714
Number of extensions: 210185
Number of successful extensions: 443
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)