BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0116600 Os06g0116600|AK103500
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0116600 Proteinase inhibitor, propeptide domain contai... 273 3e-74
Os08g0139100 Similar to DAG protein, chloroplast precursor 142 7e-35
Os04g0601800 Similar to Plastid protein 141 2e-34
Os09g0132600 Conserved hypothetical protein 127 3e-30
Os09g0509000 Conserved hypothetical protein 125 2e-29
Os11g0216400 Proteinase inhibitor, propeptide domain contai... 122 1e-28
Os04g0602000 Conserved hypothetical protein 100 7e-22
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 95 3e-20
>Os06g0116600 Proteinase inhibitor, propeptide domain containing protein
Length = 165
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/148 (90%), Positives = 134/148 (90%)
Query: 18 PTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSC 77
PTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSC
Sbjct: 18 PTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSC 77
Query: 78 ERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQRR 137
ERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQRR
Sbjct: 78 ERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQRR 137
Query: 138 VEPVPQRASDXXXXXXXXXXXXXXENQR 165
VEPVPQRASD ENQR
Sbjct: 138 VEPVPQRASDRPRYNDRTRYARRRENQR 165
>Os08g0139100 Similar to DAG protein, chloroplast precursor
Length = 229
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 78/105 (74%)
Query: 24 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGF 83
L PGCDY HWLIVM+ P T++QMID Y+ TLA VLGS EEAKK +Y S Y GF
Sbjct: 77 LLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 136
Query: 84 GCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIV 128
C +DEETS K +GLPGVL+VLPDSY+D + KDYG + ++NGEI+
Sbjct: 137 QCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEII 181
>Os04g0601800 Similar to Plastid protein
Length = 92
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 71/88 (80%)
Query: 77 CERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQR 136
CERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVD E KDYGAELFVNGEIVQRSPERQR
Sbjct: 1 CERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDAENKDYGAELFVNGEIVQRSPERQR 60
Query: 137 RVEPVPQRASDXXXXXXXXXXXXXXENQ 164
RVEPVPQRA D ENQ
Sbjct: 61 RVEPVPQRAQDRPRYSDRTRYVKRRENQ 88
>Os09g0132600 Conserved hypothetical protein
Length = 398
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 4/114 (3%)
Query: 24 LFPGCDYEHWLIVMDKPGGEGA----TKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCER 79
L GCD+EHWL+VMD P G+ + T+ ++ID YI+TLA+++GSE+EA+ KIY+VS
Sbjct: 76 LLDGCDFEHWLVVMDPPPGDPSNPEPTRDEIIDGYIKTLAQIVGSEDEARHKIYSVSTRH 135
Query: 80 YFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPE 133
YF FG + EE S KL+ LP V +VLPDSY+D KDYG E F+NGE V P+
Sbjct: 136 YFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVPYDPK 189
>Os09g0509000 Conserved hypothetical protein
Length = 396
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 4/114 (3%)
Query: 24 LFPGCDYEHWLIVMDKPGGEGA----TKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCER 79
L GCD+EHWL+V++ P G+ + T+ ++ID YI+TLA+V+GSEEEA+ KIY+VS
Sbjct: 80 LLDGCDFEHWLVVVEPPPGDPSNPEPTRDEIIDGYIKTLAQVVGSEEEARHKIYSVSTRH 139
Query: 80 YFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPE 133
YF FG + EE S KL+ LP V +VLPDSY+D KDYG E F+NGE V P+
Sbjct: 140 YFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVPYDPK 193
>Os11g0216400 Proteinase inhibitor, propeptide domain containing protein
Length = 374
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 24 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGF 83
LF GCDY HWLI M+ P + T+++MI+ Y+QTLAKV+GS EEAKK++Y S Y GF
Sbjct: 85 LFEGCDYNHWLITMEFPDPK-PTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
Query: 84 GCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSP 132
+ EE S K GLPGV+F+LPDSY+ PE K+YG + + NG I R P
Sbjct: 144 QAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPP 192
>Os04g0602000 Conserved hypothetical protein
Length = 677
Score = 100 bits (248), Expect = 7e-22, Method: Composition-based stats.
Identities = 57/101 (56%), Positives = 65/101 (64%), Gaps = 7/101 (6%)
Query: 65 EEEAKKKIYNVSCERYFGFGCEID-EETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV 123
E +K +NV G+G ++ +E + GLPGVLFVLPDSYVD E KDYGAELFV
Sbjct: 579 ETAGDRKRWNV------GYGKPVEGQEAALVAAGLPGVLFVLPDSYVDAENKDYGAELFV 632
Query: 124 NGEIVQRSPERQRRVEPVPQRASDXXXXXXXXXXXXXXENQ 164
NGEIVQRSPER+RRVEPVPQRA D ENQ
Sbjct: 633 NGEIVQRSPERRRRVEPVPQRAQDRPRYSDRTRYVKRRENQ 673
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 31 EHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEE 90
E WL+ M+KPG E TK QM+D Y QTL KVLG+E++A+ IY++S ER +GF C IDEE
Sbjct: 190 EFWLVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEE 249
Query: 91 TSNKLEGLPGVLFVLPDSYVDPEYKDY-GAELFVNGEIVQRSPERQR 136
+ +L + GVL V PD+ + K+Y G + F + E Q + +R
Sbjct: 250 CAKELADVSGVLSVQPDTNFGSDNKNYKGDDSFKSSEATQAEVKTKR 296
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 26 PGCDYEHWLIVMDKP----GGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYF 81
P C W++VM++P GG ++ + +D Y+ TLA+VLGS+EEA+ +IY+ S + +
Sbjct: 68 PHC--SRWVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSY 125
Query: 82 GFGCEIDEETSNKLEGLPGVLFVLPDS-YVDPEYKD 116
F CEID+E S L +PGVL V PD+ VD KD
Sbjct: 126 EFSCEIDDEASRDLAKMPGVLAVKPDTDKVDMSEKD 161
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,105,175
Number of extensions: 209706
Number of successful extensions: 496
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 9
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)