BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0394200 Os05g0394200|J033093J11
         (96 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0394200  Protein of unknown function DUF632 domain cont...   195   6e-51
Os01g0500550  Protein of unknown function DUF630 domain cont...   118   9e-28

>Os05g0394200 Protein of unknown function DUF632 domain containing protein
          Length = 96

 Score =  195 bits (496), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  LFHSILVDLYCLTTLDASIAQAGELMKLEYQRKVALLNRQKKHNAATEVLEKTKAAVTHL 60
          LFHSILVDLYCLTTLDASIAQAGELMKLEYQRKVALLNRQKKHNAATEVLEKTKAAVTHL
Sbjct: 1  LFHSILVDLYCLTTLDASIAQAGELMKLEYQRKVALLNRQKKHNAATEVLEKTKAAVTHL 60

Query: 61 HTRYIVDMQSMDSTVSEIQHLRDNQLYPRLLDLADR 96
          HTRYIVDMQSMDSTVSEIQHLRDNQLYPRLLDLADR
Sbjct: 61 HTRYIVDMQSMDSTVSEIQHLRDNQLYPRLLDLADR 96



>Os01g0500550 Protein of unknown function DUF630 domain containing protein
          Length = 752

 Score =  118 bits (296), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 65/75 (86%)

Query: 21  QAGELMKLEYQRKVALLNRQKKHNAATEVLEKTKAAVTHLHTRYIVDMQSMDSTVSEIQH 80
           +AGELMK++YQ+KVALL++QKK     E LEKTKAAV+HLHTRYIVDMQSMDSTVSEI  
Sbjct: 410 KAGELMKIDYQKKVALLHKQKKRGVKLETLEKTKAAVSHLHTRYIVDMQSMDSTVSEINR 469

Query: 81  LRDNQLYPRLLDLAD 95
           LRD QLYP+L+DL D
Sbjct: 470 LRDKQLYPKLVDLVD 484



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,497,581
Number of extensions: 70522
Number of successful extensions: 249
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)