BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0674400 Os04g0674400|AK102124
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0674400 Similar to Anamorsin (Cytokine induced apoptos... 460 e-130
Os04g0682050 Similar to Cytokine induced apoptosis inhibitor 1 174 5e-44
>Os04g0674400 Similar to Anamorsin (Cytokine induced apoptosis inhibitor 1)
(CUA001). Splice isoform 2
Length = 265
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/265 (87%), Positives = 233/265 (87%)
Query: 1 MAATVAEALAVTDELALPLRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVL 60
MAATVAEALAVTDELALPLRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVL
Sbjct: 1 MAATVAEALAVTDELALPLRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVL 60
Query: 61 AVIKKVENLGDLFITEISRVLKAGGMVLIQSSPSDQDPNNSIQRKLLLGGFXXXXXXXXX 120
AVIKKVENLGDLFITEISRVLKAGGMVLIQSSPSDQDPNNSIQRKLLLGGF
Sbjct: 61 AVIKKVENLGDLFITEISRVLKAGGMVLIQSSPSDQDPNNSIQRKLLLGGFVDVQASAAS 120
Query: 121 XXXXEHSVTIKAKKVSWSLGSSFPLKKATKGLPKIQXXXXXXXXXXXXXXXXXXXKKPEL 180
EHSVTIKAKKVSWSLGSSFPLKKATKGLPKIQ KKPEL
Sbjct: 121 SQDSEHSVTIKAKKVSWSLGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPEL 180
Query: 181 PVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTC 240
PVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTC
Sbjct: 181 PVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTC 240
Query: 241 PYRGLPAFKPGEKIALPGNFLAADM 265
PYRGLPAFKPGEKIALPGNFLAADM
Sbjct: 241 PYRGLPAFKPGEKIALPGNFLAADM 265
>Os04g0682050 Similar to Cytokine induced apoptosis inhibitor 1
Length = 90
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 83/83 (100%)
Query: 183 VGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPY 242
VGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPY
Sbjct: 8 VGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPY 67
Query: 243 RGLPAFKPGEKIALPGNFLAADM 265
RGLPAFKPGEKIALPGNFLAAD+
Sbjct: 68 RGLPAFKPGEKIALPGNFLAADL 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,790,663
Number of extensions: 270105
Number of successful extensions: 731
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)