BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0825700 Os03g0825700|AK067902
         (851 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0825700  Similar to Defective in exine formation            1608   0.0  

>Os03g0825700 Similar to Defective in exine formation
          Length = 851

 Score = 1608 bits (4164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/823 (95%), Positives = 783/823 (95%)

Query: 29  NKFRQREATDDMLGYPHLDEDALLKTKCPKHVELRWQTEVSSSIYATPLIADINSDGKLE 88
           NKFRQREATDDMLGYPHLDEDALLKTKCPKHVELRWQTEVSSSIYATPLIADINSDGKLE
Sbjct: 29  NKFRQREATDDMLGYPHLDEDALLKTKCPKHVELRWQTEVSSSIYATPLIADINSDGKLE 88

Query: 89  VVVPSFVHYLEVLEGSDGDKLPGWPAFHQSNVHSSPLLYDIDKDGTREIVLATYNGVVNF 148
           VVVPSFVHYLEVLEGSDGDKLPGWPAFHQSNVHSSPLLYDIDKDGTREIVLATYNGVVNF
Sbjct: 89  VVVPSFVHYLEVLEGSDGDKLPGWPAFHQSNVHSSPLLYDIDKDGTREIVLATYNGVVNF 148

Query: 149 FRVSGYMMMDKLEVPRRKVHKDWYVGLNTDPVDRSHPDVHDXXXXXXXXXXXXHPNIQDK 208
           FRVSGYMMMDKLEVPRRKVHKDWYVGLNTDPVDRSHPDVHD            HPNIQDK
Sbjct: 149 FRVSGYMMMDKLEVPRRKVHKDWYVGLNTDPVDRSHPDVHDSSIAKKAASEESHPNIQDK 208

Query: 209 PVVNESSKESQSRSTNDSTTRGVDSMKHASKEEPVESKPNSTRGQENMDVLNNLNSTDAG 268
           PVVNESSKESQSRSTNDSTTRGVDSMKHASKEEPVESKPNSTRGQENMDVLNNLNSTDAG
Sbjct: 209 PVVNESSKESQSRSTNDSTTRGVDSMKHASKEEPVESKPNSTRGQENMDVLNNLNSTDAG 268

Query: 269 NNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDASDTGTAKAATVENSEPLEADADAS 328
           NNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDASDTGTAKAATVENSEPLEADADAS
Sbjct: 269 NNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDASDTGTAKAATVENSEPLEADADAS 328

Query: 329 FNLFRDVXXXXXXXXXXXXXXXXXTMWGDEDWKEQQHEKAEDYVSIDAHILSTPVIADID 388
           FNLFRDV                 TMWGDEDWKEQQHEKAEDYVSIDAHILSTPVIADID
Sbjct: 329 FNLFRDVEDLPDEYNYDYDDYVDETMWGDEDWKEQQHEKAEDYVSIDAHILSTPVIADID 388

Query: 389 RDGIQEMVISVSYFFDHEYYDKPEHLKELGGIDIGKYIASSIVVFNLDTRQVKWTAELDL 448
           RDGIQEMVISVSYFFDHEYYDKPEHLKELGGIDIGKYIASSIVVFNLDTRQVKWTAELDL
Sbjct: 389 RDGIQEMVISVSYFFDHEYYDKPEHLKELGGIDIGKYIASSIVVFNLDTRQVKWTAELDL 448

Query: 449 STDSGNFTAHAYSSPTVVDLDGDGNLDILVGTSFGLFYVIDHRGKVRNKFPLEMAEIHAP 508
           STDSGNFTAHAYSSPTVVDLDGDGNLDILVGTSFGLFYVIDHRGKVRNKFPLEMAEIHAP
Sbjct: 449 STDSGNFTAHAYSSPTVVDLDGDGNLDILVGTSFGLFYVIDHRGKVRNKFPLEMAEIHAP 508

Query: 509 VIAADINDDGKIEMVTADVHGNVAAWTAEGEEIWEVHLKSLIPQRPTVGDVNGDGRTEVV 568
           VIAADINDDGKIEMVTADVHGNVAAWTAEGEEIWEVHLKSLIPQRPTVGDVNGDGRTEVV
Sbjct: 509 VIAADINDDGKIEMVTADVHGNVAAWTAEGEEIWEVHLKSLIPQRPTVGDVNGDGRTEVV 568

Query: 569 VPTVSGNIYVLSGKDGSKIQPFPYRTHGRIMSPVLLLDMSKHDEKSKGLTLATTSFDGYL 628
           VPTVSGNIYVLSGKDGSKIQPFPYRTHGRIMSPVLLLDMSKHDEKSKGLTLATTSFDGYL
Sbjct: 569 VPTVSGNIYVLSGKDGSKIQPFPYRTHGRIMSPVLLLDMSKHDEKSKGLTLATTSFDGYL 628

Query: 629 YLIEGSSGCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKEW 688
           YLIEGSSGCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKEW
Sbjct: 629 YLIEGSSGCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKEW 688

Query: 689 RSSNQGRNNAAYRYNREGIYVKHGSRTFRDEEGKHFWVEFEIVDKYRVPYGNQAPYNVTV 748
           RSSNQGRNNAAYRYNREGIYVKHGSRTFRDEEGKHFWVEFEIVDKYRVPYGNQAPYNVTV
Sbjct: 689 RSSNQGRNNAAYRYNREGIYVKHGSRTFRDEEGKHFWVEFEIVDKYRVPYGNQAPYNVTV 748

Query: 749 TLLVPGNYQGERRIVVNAAYNEPGKQRMKLPTVPVRTTGTVLVEMVDKNGFYFSDEFSLT 808
           TLLVPGNYQGERRIVVNAAYNEPGKQRMKLPTVPVRTTGTVLVEMVDKNGFYFSDEFSLT
Sbjct: 749 TLLVPGNYQGERRIVVNAAYNEPGKQRMKLPTVPVRTTGTVLVEMVDKNGFYFSDEFSLT 808

Query: 809 FHMHYYKXXXXXXXXXXXGMFSVLVILRPQEGAPLPSFSRNID 851
           FHMHYYK           GMFSVLVILRPQEGAPLPSFSRNID
Sbjct: 809 FHMHYYKLLKWLVLLPMLGMFSVLVILRPQEGAPLPSFSRNID 851



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,478,220
Number of extensions: 1244411
Number of successful extensions: 2295
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2270
Number of HSP's successfully gapped: 1
Length of query: 851
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 742
Effective length of database: 11,344,475
Effective search space: 8417600450
Effective search space used: 8417600450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)