BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0719300 Os03g0719300|AK119254
(594 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0719300 Similar to Dihydroxyacetone/glycerone kinase-l... 1046 0.0
>Os03g0719300 Similar to Dihydroxyacetone/glycerone kinase-like protein
Length = 594
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/594 (88%), Positives = 526/594 (88%)
Query: 1 MALQGKKLINDPNDVVTEFIEGLVETYPGLQYLDGFPQIKVVLRADVVQGAYDKVAVISG 60
MALQGKKLINDPNDVVTEFIEGLVETYPGLQYLDGFPQIKVVLRADVVQGAYDKVAVISG
Sbjct: 1 MALQGKKLINDPNDVVTEFIEGLVETYPGLQYLDGFPQIKVVLRADVVQGAYDKVAVISG 60
Query: 61 GGSGHEPTHAGFVGPGMLTAAVSGDVFTSPPVDSILAAIRAVTGPMGCLLIVKNYTGDRL 120
GGSGHEPTHAGFVGPGMLTAAVSGDVFTSPPVDSILAAIRAVTGPMGCLLIVKNYTGDRL
Sbjct: 61 GGSGHEPTHAGFVGPGMLTAAVSGDVFTSPPVDSILAAIRAVTGPMGCLLIVKNYTGDRL 120
Query: 121 NFGLAAEQAKSEGYKMEMVIVGDDCALPPPRGIAGRRGLAGTILVHKXXXXXXXXXXXXX 180
NFGLAAEQAKSEGYKMEMVIVGDDCALPPPRGIAGRRGLAGTILVHK
Sbjct: 121 NFGLAAEQAKSEGYKMEMVIVGDDCALPPPRGIAGRRGLAGTILVHKVAGAAADAGLSLA 180
Query: 181 XXXXEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPID 240
EAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPID
Sbjct: 181 EVAAEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPID 240
Query: 241 VVVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAV 300
VVVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAV
Sbjct: 241 VVVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAV 300
Query: 301 DRVYTGTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIXXXXXX 360
DRVYTGTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKI
Sbjct: 301 DRVYTGTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPP 360
Query: 361 XXXGKDDEILTEPQELSKQGCXXXXXXXXXXXXXXXXKDNLNEWDSKVGDGDCGTTMYRG 420
GKDDEILTEPQELSKQGC KDNLNEWDSKVGDGDCGTTMYRG
Sbjct: 361 SPSGKDDEILTEPQELSKQGCILEAAIEAGAKEIINIKDNLNEWDSKVGDGDCGTTMYRG 420
Query: 421 ATTILEDLKKRYPMNDAAGTINEIGSTVRRVMGGTSGILYDILCKAAYASLKQNTSIGAN 480
ATTILEDLKKRYPMNDAAGTINEIGSTVRRVMGGTSGILYDILCKAAYASLKQNTSIGAN
Sbjct: 421 ATTILEDLKKRYPMNDAAGTINEIGSTVRRVMGGTSGILYDILCKAAYASLKQNTSIGAN 480
Query: 481 EWADALEASVAAVSKYGGASAGYRTMLDALIPACTVLKQSLKAGDDPVTAFIXXXXXXXX 540
EWADALEASVAAVSKYGGASAGYRTMLDALIPACTVLKQSLKAGDDPVTAFI
Sbjct: 481 EWADALEASVAAVSKYGGASAGYRTMLDALIPACTVLKQSLKAGDDPVTAFIASSEAASA 540
Query: 541 XXXXTKQMQAKAGRSSYIAPDLVASVPDPGXXXXXXXXXXXXXXVKSKLHASDS 594
TKQMQAKAGRSSYIAPDLVASVPDPG VKSKLHASDS
Sbjct: 541 GAESTKQMQAKAGRSSYIAPDLVASVPDPGAVAAAAWYRAAAHAVKSKLHASDS 594
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,386,214
Number of extensions: 717569
Number of successful extensions: 1764
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1762
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 488
Effective length of database: 11,501,117
Effective search space: 5612545096
Effective search space used: 5612545096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)