BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0152000 Os03g0152000|AK102357
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0152000 Heavy metal transport/detoxification protein d... 256 2e-68
Os02g0819000 Heavy metal transport/detoxification protein d... 65 8e-11
>Os03g0152000 Heavy metal transport/detoxification protein domain containing
protein
Length = 348
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 160/348 (45%), Positives = 160/348 (45%)
Query: 1 MGDEKAAPKAGATADPVVLRMELHCAGCAQKVKKSIKHLAGVESXXXXXXXXXXXXXXXX 60
MGDEKAAPKAGATADPVVLRMELHCAGCAQKVKKSIKHLAGVES
Sbjct: 1 MGDEKAAPKAGATADPVVLRMELHCAGCAQKVKKSIKHLAGVESVAADVATNTVVVAGTA 60
Query: 61 XXXXXXXXXXXXTKKXXXXXXXXXXXXXXXXXXXXXXXXXDDXXXXXXXXXXXXXXXXXX 120
TKK DD
Sbjct: 61 EAAALKARIEAKTKKPVEVVSAGGGGAAAKKPAAEPKAVKDDGGEKKDAQAKEEKGKKQP 120
Query: 121 XXXXXXXXXTVLLRIRLHCDGCADRIRRRIYKIKGVKEVVMDGNAKDEVKVSGTMDVPAM 180
TVLLRIRLHCDGCADRIRRRIYKIKGVKEVVMDGNAKDEVKVSGTMDVPAM
Sbjct: 121 PEEKKPKEETVLLRIRLHCDGCADRIRRRIYKIKGVKEVVMDGNAKDEVKVSGTMDVPAM 180
Query: 181 LTYLTEKLNRAVEAVAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIEVXXXXX 240
LTYLTEKLNRAVEAVAPGS SIEV
Sbjct: 181 LTYLTEKLNRAVEAVAPGSKKDEKKKDKGGDADGGEKKKDAAGGDKKDKGKSIEVAGPST 240
Query: 241 XXXXXXXXXXXXXXXTYHVSPYGHGYFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
TYHVSPYGHGYFA
Sbjct: 241 AAAAASMAPAPAEASTYHVSPYGHGYFAYPQQQGPPPSYYQYYGGGNGDGVGYANPNAGG 300
Query: 301 XXXXXXXXXXDVXXXXXXXXXXXXXXQLDMSPAPQLFSDENPNACSVM 348
DV QLDMSPAPQLFSDENPNACSVM
Sbjct: 301 AGGYYHPHPNDVPTYQPPPSYPPYPYQLDMSPAPQLFSDENPNACSVM 348
>Os02g0819000 Heavy metal transport/detoxification protein domain containing
protein
Length = 419
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 135 IRLHCDGCADRIRRRIYKIKGVKEVVMDGNAKDEVKVSGTMDVPAMLTYLTEKLNRAVEA 194
+ LHCDGC +RIR +++ I+GV++V M+ AK++V V+GTMD+ A+ L +KL R V+
Sbjct: 253 VGLHCDGCMNRIRTKLFHIQGVEQVAME-MAKNQVTVTGTMDIKALPEKLRKKLRRPVDV 311
Query: 195 VAP 197
V P
Sbjct: 312 VPP 314
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,197,667
Number of extensions: 112991
Number of successful extensions: 477
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)