BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0776700 Os02g0776700|AK070394
         (621 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0776700  Similar to Single myb histone 6                    1209   0.0  

>Os02g0776700 Similar to Single myb histone 6
          Length = 621

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/621 (95%), Positives = 592/621 (95%)

Query: 1   MEVGGPQXXXXXXXXXXXXXXXXXXXPVVYQLVRVEGDGTLIPATEDEVLQFETFLHDEK 60
           MEVGGPQ                   PVVYQLVRVEGDGTLIPATEDEVLQFETFLHDEK
Sbjct: 1   MEVGGPQDALDNRSDDNDFDKNDNSDPVVYQLVRVEGDGTLIPATEDEVLQFETFLHDEK 60

Query: 61  VDDDLPSIDDVTHVEEYFTNDCIVKKPEFEEGPSKLDTADVQTQKLDAGLEEDRLCTLND 120
           VDDDLPSIDDVTHVEEYFTNDCIVKKPEFEEGPSKLDTADVQTQKLDAGLEEDRLCTLND
Sbjct: 61  VDDDLPSIDDVTHVEEYFTNDCIVKKPEFEEGPSKLDTADVQTQKLDAGLEEDRLCTLND 120

Query: 121 SIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTETTKSTVLNDLSSDKEKADACSKP 180
           SIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTETTKSTVLNDLSSDKEKADACSKP
Sbjct: 121 SIVLPSNCSAVHDQQLDKLNTEQGANIIAQQDNASTETTKSTVLNDLSSDKEKADACSKP 180

Query: 181 VNEASAGQSVSGVTSSVPDFSILKGEVCLDDLTMRELQEAFRATFGRQTTVKDKLWLKRR 240
           VNEASAGQSVSGVTSSVPDFSILKGEVCLDDLTMRELQEAFRATFGRQTTVKDKLWLKRR
Sbjct: 181 VNEASAGQSVSGVTSSVPDFSILKGEVCLDDLTMRELQEAFRATFGRQTTVKDKLWLKRR 240

Query: 241 IAMGLINSCDVPSSGCVVRDYKVIAMGAKQEIPVVEAIPKMELEANLVRDQVMNPGHERD 300
           IAMGLINSCDVPSSGCVVRDYKVIAMGAKQEIPVVEAIPKMELEANLVRDQVMNPGHERD
Sbjct: 241 IAMGLINSCDVPSSGCVVRDYKVIAMGAKQEIPVVEAIPKMELEANLVRDQVMNPGHERD 300

Query: 301 LPSSLSYHSEEQQRSSKRLKRVPTDNDEPQVTIFAEQGTTKRIRKPTKRYIEELSDIDTH 360
           LPSSLSYHSEEQQRSSKRLKRVPTDNDEPQVTIFAEQGTTKRIRKPTKRYIEELSDIDTH
Sbjct: 301 LPSSLSYHSEEQQRSSKRLKRVPTDNDEPQVTIFAEQGTTKRIRKPTKRYIEELSDIDTH 360

Query: 361 ESTGRLSSPGKRHVYDEVLLRPRIAPLHEVDSLSTAYPTREDTLGGCSVHVPYVSRMRRG 420
           ESTGRLSSPGKRHVYDEVLLRPRIAPLHEVDSLSTAYPTREDTLGGCSVHVPYVSRMRRG
Sbjct: 361 ESTGRLSSPGKRHVYDEVLLRPRIAPLHEVDSLSTAYPTREDTLGGCSVHVPYVSRMRRG 420

Query: 421 RPRSNFIPFLDPEPSVECTEAPAADVVNLEKEGERKNHKNTGKKGVHVETSCEKDVQGLQ 480
           RPRSNFIPFLDPEPSVECTEAPAADVVNLEKEGERKNHKNTGKKGVHVETSCEKDVQGLQ
Sbjct: 421 RPRSNFIPFLDPEPSVECTEAPAADVVNLEKEGERKNHKNTGKKGVHVETSCEKDVQGLQ 480

Query: 481 DKDFCDSDDNPKTXXXXXXXXXXAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRT 540
           DKDFCDSDDNPKT          AWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRT
Sbjct: 481 DKDFCDSDDNPKTKRGGKRKHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSSYSYRT 540

Query: 541 SVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPVSILLRVKKLAEMQSQAGDVR 600
           SVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPVSILLRVKKLAEMQSQAGDVR
Sbjct: 541 SVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPVSILLRVKKLAEMQSQAGDVR 600

Query: 601 VPIKFSGQSTTVVQGKVSGFL 621
           VPIKFSGQSTTVVQGKVSGFL
Sbjct: 601 VPIKFSGQSTTVVQGKVSGFL 621



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,735,419
Number of extensions: 907976
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1685
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 514
Effective length of database: 11,448,903
Effective search space: 5884736142
Effective search space used: 5884736142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)