BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717300 Os02g0717300|AK065836
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0717300  Mitochondrial import inner membrane translocas...   240   3e-64
Os09g0279300  Mitochondrial import inner membrane translocas...    81   3e-16

>Os02g0717300 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 150

 Score =  240 bits (613), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 120/150 (80%)

Query: 1   MGLEEDXXXXXXXXXXXXXXXXXXIWGTVVATWHDVPRVERHVALPGLIRTLKMCGSYGA 60
           MGLEED                  IWGTVVATWHDVPRVERHVALPGLIRTLKMCGSYGA
Sbjct: 1   MGLEEDTPVTKTVKAAATGLAAGTIWGTVVATWHDVPRVERHVALPGLIRTLKMCGSYGA 60

Query: 61  TFAAVGGLYIGVEQLVLSQRKKNDYXXXXXXXXXXXXTIFGYKGRSIPSALIAGSCLAFT 120
           TFAAVGGLYIGVEQLVLSQRKKNDY            TIFGYKGRSIPSALIAGSCLAFT
Sbjct: 61  TFAAVGGLYIGVEQLVLSQRKKNDYVNGAVGAFVAGATIFGYKGRSIPSALIAGSCLAFT 120

Query: 121 SAALDVGGNTTRVDNGKEYYPYTVENKPAH 150
           SAALDVGGNTTRVDNGKEYYPYTVENKPAH
Sbjct: 121 SAALDVGGNTTRVDNGKEYYPYTVENKPAH 150



>Os09g0279300 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 148

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 25  IWGTVVATWHDVPRVERHVALPGLIRTLKMCGSYGATFAAVGGLYIGVEQLVLSQRKKND 84
           +WG VVA   + P V  +V  P L+R  K+ G+Y A+FA +G  Y+G+EQ + + RKK D
Sbjct: 31  VWGGVVAMHFNGPHVGSNVKYPELVRIGKVSGNYAASFALLGATYVGIEQSLENCRKK-D 89

Query: 85  YXXXXXXXXXXXXTIFGYKGRSIPSALIAGSCLAFTSAALDVGGNTTRVDNGK 137
           Y            T+ G++ RS+P+A+++G  +A TS  LDV G  T  +  K
Sbjct: 90  YINGAVAGFTAGATVLGFRARSLPTAVLSGCAIALTSVLLDVTGMKTTDEEAK 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,092,308
Number of extensions: 127382
Number of successful extensions: 303
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)