BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0669100 Os02g0669100|AY587109
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0669100  Dehydrin family protein                             278   3e-75

>Os02g0669100 Dehydrin family protein
          Length = 290

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/290 (57%), Positives = 168/290 (57%)

Query: 1   MEDERNTESHQGGEAAEQVEVKDRGLFDNLLGRKKDDQPEEKKHEEELVTGMXXXXXXXX 60
           MEDERNTESHQGGEAAEQVEVKDRGLFDNLLGRKKDDQPEEKKHEEELVTGM        
Sbjct: 1   MEDERNTESHQGGEAAEQVEVKDRGLFDNLLGRKKDDQPEEKKHEEELVTGMEKVSVEEP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDDNXXXXXXXXXXXXXXXXXXXX 120
                                              VIDDN                    
Sbjct: 61  KKEEHHAEGEKKESLLSKLHRSSSSSSSSSDEEEEVIDDNGEVVKRKKKKGLKEKIKEKL 120

Query: 121 PGHKDHAGEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGDHHHDTAVPVEKIEGD 180
           PGHKDHAGEH                                HGDHHHDTAVPVEKIEGD
Sbjct: 121 PGHKDHAGEHAPPPAATGFPAPAPPASVVTAAPTPAPAPVVTHGDHHHDTAVPVEKIEGD 180

Query: 181 HAKTEATLPRAPEEEKKGFLDKIKEKLPGGHKKPEDXXXXXXXXXXXXXXXXXXXXXXXX 240
           HAKTEATLPRAPEEEKKGFLDKIKEKLPGGHKKPED                        
Sbjct: 181 HAKTEATLPRAPEEEKKGFLDKIKEKLPGGHKKPEDATAVPPPAASPAAPATTPAPAHPP 240

Query: 241 XXXEEVSSPDGKEKKGILGKIMEKLPGYHKGSGEEDKTAAAATGEHKSSA 290
              EEVSSPDGKEKKGILGKIMEKLPGYHKGSGEEDKTAAAATGEHKSSA
Sbjct: 241 PATEEVSSPDGKEKKGILGKIMEKLPGYHKGSGEEDKTAAAATGEHKSSA 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.303    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,020,682
Number of extensions: 223830
Number of successful extensions: 459
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 155 (64.3 bits)