BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0640800 Os02g0640800|AK069956
         (168 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0640800  Similar to (-)-isopiperitenone reductase            295   9e-81

>Os02g0640800 Similar to (-)-isopiperitenone reductase
          Length = 168

 Score =  295 bits (756), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 146/168 (86%), Positives = 146/168 (86%)

Query: 1   MSCTRKIWMGLFSKLVVHIHSWRSILPRSRITTTLCAITLCHHLNSTVNQSMWLPSIPRP 60
           MSCTRKIWMGLFSKLVVHIHSWRSILPRSRITTTLCAITLCHHLNSTVNQSMWLPSIPRP
Sbjct: 1   MSCTRKIWMGLFSKLVVHIHSWRSILPRSRITTTLCAITLCHHLNSTVNQSMWLPSIPRP 60

Query: 61  IIQVQPYSNLFTSVSCTCAIPPFFLALEPALRVRALLHDGTRKQQLLPGREKGCSGDRRE 120
           IIQVQPYSNLFTSVSCTCAIPPFFLALEPALRVRALLHDGTRKQQLLPGREKGCSGDRRE
Sbjct: 61  IIQVQPYSNLFTSVSCTCAIPPFFLALEPALRVRALLHDGTRKQQLLPGREKGCSGDRRE 120

Query: 121 QRTWARDMQAAGCQWSHRRLDXXXXXXXXXXXXXXXXXXXXXXPVPSV 168
           QRTWARDMQAAGCQWSHRRLD                      PVPSV
Sbjct: 121 QRTWARDMQAAGCQWSHRRLDSEERGEGRRSSGRASSARAIGGPVPSV 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.135    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,661,898
Number of extensions: 216432
Number of successful extensions: 574
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)