BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0151400 Os02g0151400|AK101581
(406 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0151400 Conserved hypothetical protein 814 0.0
Os02g0138300 152 5e-37
Os02g0136400 Conserved hypothetical protein 77 3e-14
Os02g0303100 74 2e-13
>Os02g0151400 Conserved hypothetical protein
Length = 406
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/406 (97%), Positives = 396/406 (97%)
Query: 1 MSLLRRVGRRFLAGDILSSEASPHAVGRLFTEPPLPSPLEGVRSPSPLPLPRATKQPFIG 60
MSLLRRVGRRFLAGDILSSEASPHAVGRLFTEPPLPSPLEGVRSPSPLPLPRATKQPFIG
Sbjct: 1 MSLLRRVGRRFLAGDILSSEASPHAVGRLFTEPPLPSPLEGVRSPSPLPLPRATKQPFIG 60
Query: 61 IFSPFKSYPLQVIRESLPLAHHQSLSRNAIGPSYRWPWTRLTSAVALPKLLGTRWASTNT 120
IFSPFKSYPLQVIRESLPLAHHQSLSRNAIGPSYRWPWTRLTSAVALPKLLGTRWASTNT
Sbjct: 61 IFSPFKSYPLQVIRESLPLAHHQSLSRNAIGPSYRWPWTRLTSAVALPKLLGTRWASTNT 120
Query: 121 SSTTGFGPCFTSAGELIDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLVRSLNKTY 180
SSTTGFGPCFTSAGELIDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLVRSLNKTY
Sbjct: 121 SSTTGFGPCFTSAGELIDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLVRSLNKTY 180
Query: 181 ALLHAKKKCLSSLTSSNVLVGEDGSAVIQGVIEIPYSEEEACCRYNETASILKELITESV 240
ALLHAKKKCLSSLTSSNVLVGEDGSAVIQGVIEIPYSEEEACCRYNETASILKELITESV
Sbjct: 181 ALLHAKKKCLSSLTSSNVLVGEDGSAVIQGVIEIPYSEEEACCRYNETASILKELITESV 240
Query: 241 GSEAIGVDCIADFRRLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMGKLA 300
GSEAIGVDCIADFRRLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMGKLA
Sbjct: 241 GSEAIGVDCIADFRRLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMGKLA 300
Query: 301 QEQPRLKNQIISKLPYDGIWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYV 360
QEQPRLKNQIISKLPYDGIWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYV
Sbjct: 301 QEQPRLKNQIISKLPYDGIWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYV 360
Query: 361 HLWIFAYSQLEVEECLYGEFPXXXXXXXXXXWKANEIDGLGFEDKF 406
HLWIFAYSQLEVEECLYGEFP WKANEIDGLGFEDKF
Sbjct: 361 HLWIFAYSQLEVEECLYGEFPELLLEIEILLWKANEIDGLGFEDKF 406
>Os02g0138300
Length = 700
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 142/274 (51%), Gaps = 11/274 (4%)
Query: 135 ELIDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLVRSLNKTYALLHAKKKCLSSLT 194
E+IDA TY +ANP++ K ++G K W +D RL+R L + +LH +K+ L +
Sbjct: 433 EIIDAETYVKANPMLVKANVLG-SAKTFWRMSDIAVRLIRRLARILKILHEQKRYLLAPL 491
Query: 195 SSNVLVGEDGSAVIQGVI--EIPYSEEEACCRYNETASILKELITESVGSEAIGVDCIAD 252
S LV G ++ V + +S + C Y + +L+ELI SVG + + D
Sbjct: 492 SVQNLVIVSGELKLRNVTLADDDFSFDRIKCDYQYMSVVLEELIMLSVGQNGLS-NIPPD 550
Query: 253 FRRLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMGKLAQEQPRLKNQIIS 312
F + L ++ + E++I+NHASL+P ANRT F++ YNHIMG L ++ P+ K I+S
Sbjct: 551 FGKYLGLLKGLVKPDDEFLITNHASLLPMANRTDAFMMMYNHIMGYLGRKDPKKKIYILS 610
Query: 313 KLPYDGIWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYVHLWIFAYSQLEV 372
L YD WL N + +WL R Y T + + N N+RSH Y H S+ ++
Sbjct: 611 HLKYDTDWLRTASGNSEIGKWL-WRRRYGQTVKEFLHLNRNIRSHPYEH------SEEKI 663
Query: 373 EECLYGEFPXXXXXXXXXXWKANEIDGLGFEDKF 406
EE LYGE+P K E+ E KF
Sbjct: 664 EEALYGEWPELLVEMQEKLHKEGELQNTEMESKF 697
>Os02g0136400 Conserved hypothetical protein
Length = 749
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 117/291 (40%), Gaps = 27/291 (9%)
Query: 137 IDALTYARANPLMRKVKIMGREDKIIWIPNDNLRRLVRSLNKTYALLHAKKKCLSSLTSS 196
D +AR N LM ++G+E + + + L SL H C S +++S
Sbjct: 449 FDPKEFARCNKLMETYNVLGQEWTFTKL-KEQTKYLFDSLIVLVESFHEAGYCFSQISTS 507
Query: 197 NVLVGEDGSAVI-QGVIEIP-YSEEEACCRYNETASILKELITESVGSEAIGVDCIADFR 254
VLV V+ +G + +S E Y + A + ++L++ES+G E + DF
Sbjct: 508 TVLVTSSWKFVLLEGCFALNNWSVEGVRKDYRDIAVLFRKLLSESMGEETVHP---PDFG 564
Query: 255 RLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMG-KLAQEQPR-------- 305
LL ME +Y+I H SL+PD N ++ + I LA+E+ +
Sbjct: 565 MLLSLMEK-DGFRYKYLIGTHVSLLPDDNINIAYMKIHEFIRKILLAEEKDKARQLKLGI 623
Query: 306 -----LKNQIISKLPYDGIWLGIVISNRFLRRWLNSHREYVSTGDDDMSFNWNVRSHFYV 360
+ +I ++PY IWL SN F+ +L + + G +R HF
Sbjct: 624 TRYSTISTRIRRRIPYKNIWLTKARSNSFMTAFLEQNERNMELGGTYFELLDTIR-HFVC 682
Query: 361 HLWI-----FAYSQLEVEECLYGEFPXXXXXXXXXXWKANEIDGLGFEDKF 406
H F Y EV+ Y EFP + ++ L E F
Sbjct: 683 HRLDLLKLGFRYKANEVDRMWYAEFPTLLAELQLALFLVGRLEELELEKNF 733
>Os02g0303100
Length = 746
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 52/313 (16%)
Query: 76 SLPLAHHQSLSRNAIGPSYRWPWTRLTSAVALPKLLGTRWASTNTSSTTGFGPCFTSAGE 135
S+P++ +Q ++N IG +LP G + NT + + E
Sbjct: 295 SMPISANQDTNKNDIGVD------------SLPTKRGVVFPFRNTHHVSY--AEYIRDLE 340
Query: 136 LIDALTYARANPLM-------RKVKIMGREDKIIWIPNDNLRRLVRSLNKTYALLHAKKK 188
+ Y + P+M R ++M E K + +R+L K LH + K
Sbjct: 341 FKPLIEYIKHTPVMLVGPTRQRVYRLMTEEAKFV----------IRALLKELYFLHKRGK 390
Query: 189 CLSSLTSSNVLVGEDGSAVIQGVIEIPYSEEEACCRYNETASILKELITESVGSEAIGVD 248
C + SNV + EDG ++G ++ Y + I+ E++ E I D
Sbjct: 391 CPRNFDESNVFIREDGIVQLRGSELDDKNDSLVSKNYKDAGKIIMEIVF-GQHKEDIPED 449
Query: 249 CIADFRRLLRQMESMTSVCQEYIISNHASLIPDANRTAVFLLFYNHIMGKLAQEQPRLKN 308
+ L+ + + S+ EY+I HASL+P NR A FL Y IM L ++ K+
Sbjct: 450 -VMHLLNLMNTGDKVISMDLEYLICTHASLVPLRNREAFFLWMYAFIMFVLPCDKSTEKD 508
Query: 309 QIIS---KLPYDGIWLGIVISNRF-----------LRRWLNSHREYVSTGDDDMSFNWNV 354
+II+ KL + G G + +F + +LNS+R+ + G D+ + N
Sbjct: 509 EIINALRKLDWGGKLQGTSLLRKFSWCKRDGSEEEIDSFLNSYRDTIYHGMDECNGN--- 565
Query: 355 RSHFYVHLWIFAY 367
Y+ LW+F Y
Sbjct: 566 -GKRYI-LWMFNY 576
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,553,725
Number of extensions: 588450
Number of successful extensions: 2312
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2305
Number of HSP's successfully gapped: 4
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)