BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0963300 Os01g0963300|AK067544
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0963300 Similar to Syntaxin 61 (AtSYP61) (Osmotic stes... 446 e-125
Os11g0168100 Similar to Syntaxin 61 (AtSYP61) (Osmotic stes... 169 2e-42
>Os01g0963300 Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
Length = 234
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MSSAQDPFYIVREEIQDSIDKLQTTFHRWEKTPSNTGEHVHLTKELHTSCESIEWQVDEL 60
MSSAQDPFYIVREEIQDSIDKLQTTFHRWEKTPSNTGEHVHLTKELHTSCESIEWQVDEL
Sbjct: 1 MSSAQDPFYIVREEIQDSIDKLQTTFHRWEKTPSNTGEHVHLTKELHTSCESIEWQVDEL 60
Query: 61 EKTILVASRDPAYYGLDEVELSRRRNWIGSARNQVAAVRRSVEKGKSNSTFSAHQDMGTS 120
EKTILVASRDPAYYGLDEVELSRRRNWIGSARNQVAAVRRSVEKGKSNSTFSAHQDMGTS
Sbjct: 61 EKTILVASRDPAYYGLDEVELSRRRNWIGSARNQVAAVRRSVEKGKSNSTFSAHQDMGTS 120
Query: 121 RSNHYTAQDNDDFIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQERIL 180
RSNHYTAQDNDDFIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQERIL
Sbjct: 121 RSNHYTAQDNDDFIASESDRQLLLMRQQDEELDELSESVQRIGGVGLTIHEELSGQERIL 180
Query: 181 NDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQIM 215
NDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQIM
Sbjct: 181 NDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQIM 215
>Os11g0168100 Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
Length = 141
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
Query: 95 VAAVRRSVEKGKSNSTFSAHQDMG-TSRSNHYTAQDNDDFIASESDRQLLLMRQQDEELD 153
V ++RR VE GK S F + RS + AQDNDDFIASESD+Q+LL+++QDEELD
Sbjct: 1 VVSIRRCVEAGKQKSAFGHSVNPSELVRSKQHIAQDNDDFIASESDQQMLLIKRQDEELD 60
Query: 154 ELSESVQRIGGVGLTIHEELSGQERILNDLSLEMETTSNRLDFVQKRVAMVMKKAGIKGQ 213
ELS SVQRIGGVGLTIH+EL GQER+L +LSL+METT+NRLDFVQKRVAMV+KKA +KGQ
Sbjct: 61 ELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAMVLKKASLKGQ 120
Query: 214 IM 215
IM
Sbjct: 121 IM 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,594,098
Number of extensions: 256460
Number of successful extensions: 920
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)