BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0885600 Os01g0885600|AK059523
(400 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0885600 Esterase/lipase/thioesterase domain containing... 769 0.0
Os01g0862000 Esterase/lipase/thioesterase domain containing... 80 3e-15
>Os01g0885600 Esterase/lipase/thioesterase domain containing protein
Length = 400
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/392 (96%), Positives = 379/392 (96%)
Query: 9 PRVLSAEPRRRDPVAVGVPPWRLSPGSRVRAASRARQENVRRGQLISTNIKSRPLLCPPC 68
PRVLSAEPRRRDPVAVGVPPWRLSPGSRVRAASRARQENVRRGQLISTNIKSRPLLCPPC
Sbjct: 9 PRVLSAEPRRRDPVAVGVPPWRLSPGSRVRAASRARQENVRRGQLISTNIKSRPLLCPPC 68
Query: 69 RCVQMALANTRIAYQPDVQKHSGVLAYELVQGSLVQWNSFMDKSVPDPPTAVLLHGILGS 128
RCVQMALANTRIAYQPDVQKHSGVLAYELVQGSLVQWNSFMDKSVPDPPTAVLLHGILGS
Sbjct: 69 RCVQMALANTRIAYQPDVQKHSGVLAYELVQGSLVQWNSFMDKSVPDPPTAVLLHGILGS 128
Query: 129 RKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALDVLKLIVQLRLTP 188
RKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALDVLKLIVQLRLTP
Sbjct: 129 RKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALDVLKLIVQLRLTP 188
Query: 189 RVLVGHSFGGKVALSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIESLRRM 248
RVLVGHSFGGKVALSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIESLRRM
Sbjct: 189 RVLVGHSFGGKVALSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIESLRRM 248
Query: 249 PMQVSSKQEVVDALVKEQFSVDVARWVATNLRRXXXXXXXXXXXXXWIFDLNGISDMYKS 308
PMQVSSKQEVVDALVKEQFSVDVARWVATNLRR WIFDLNGISDMYKS
Sbjct: 249 PMQVSSKQEVVDALVKEQFSVDVARWVATNLRRSSPLGSLSSSSFSWIFDLNGISDMYKS 308
Query: 309 YEETNLWGIVENVPRGVHINFLKAERSLHRWALDDLQRIHTAEELAADEGGGVEMHVLED 368
YEETNLWGIVENVPRGVHINFLKAERSLHRWALDDLQRIHTAEELAADEGGGVEMHVLED
Sbjct: 309 YEETNLWGIVENVPRGVHINFLKAERSLHRWALDDLQRIHTAEELAADEGGGVEMHVLED 368
Query: 369 AGHWVHADNPDGLFRILSSTFRIEATIRGMQN 400
AGHWVHADNPDGLFRILSSTFRIEATIRGMQN
Sbjct: 369 AGHWVHADNPDGLFRILSSTFRIEATIRGMQN 400
>Os01g0862000 Esterase/lipase/thioesterase domain containing protein
Length = 186
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Query: 114 PDPPTAVLLHGILGSRKNWGSFAKRLAQEF------PMWQFLLVDLRCHGDSASIKK-RG 166
P TA +LHG+LGS +NW SF++ LA E W+ +LVDLR HG SA IK R
Sbjct: 58 PSTATAFVLHGLLGSGRNWRSFSRALASELRDRSPSDEWRMVLVDLRNHGRSAGIKGLRP 117
Query: 167 PHTVASTALDVLKLIVQLRLT-PRVLVGHSFGGKVALSMVEQAAK 210
PH +++ A D+ L+ P V+VGHS GGKVAL E ++
Sbjct: 118 PHDMSTAARDLADLVKARGWAWPDVVVGHSMGGKVALDFAESCSR 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,839,558
Number of extensions: 577422
Number of successful extensions: 1657
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1655
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 297
Effective length of database: 11,657,759
Effective search space: 3462354423
Effective search space used: 3462354423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)