BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0763800 Os01g0763800|AK069980
         (403 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0763800  Conserved hypothetical protein                      374   e-104

>Os01g0763800 Conserved hypothetical protein
          Length = 403

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/403 (57%), Positives = 230/403 (57%)

Query: 1   MRKLCPNLDRNVVGSPLIPCPVPHDRAFSRSIRDSSIVSHRSPARVARARVHACSAAGWF 60
           MRKLCPNLDRNVVGSPLIPCPVPHDRAFSRSIRDSSIVSHRSPARVARARVHACSAAGWF
Sbjct: 1   MRKLCPNLDRNVVGSPLIPCPVPHDRAFSRSIRDSSIVSHRSPARVARARVHACSAAGWF 60

Query: 61  LTRSSPSSCVCARVWSASVDGQVXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXX 120
           LTRSSPSSCVCARVWSASVDGQV                         K           
Sbjct: 61  LTRSSPSSCVCARVWSASVDGQVHHAAVHRGDGRAGGVAGAAEHVRRGKGADVRVGVPPR 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXVPRGLVLRAHHGRPQDERRQRRQGXXXXXXXXXXXXXXX 180
                                VPRGLVLRAHHGRPQDERRQRRQG               
Sbjct: 121 RPERDRRAGPRRGRRVRALAEVPRGLVLRAHHGRPQDERRQRRQGRLAPVRRRELPRLPR 180

Query: 181 XXXXXXXXXXXXXXXXDREPVLRRGVHRREDHHRGGVLHPEAGGERGDAAXXXXXXXXXX 240
                           DREPVLRRGVHRREDHHRGGVLHPEAGGERGDAA          
Sbjct: 181 PSPPPPPLPPGAGPEVDREPVLRRGVHRREDHHRGGVLHPEAGGERGDAARPERGGVRHH 240

Query: 241 XXXXXXLLQPAHGPAHPVGGLAPPPHEVRQGRPPQREXXXXXXXXXXXXXXXXXXXXXXX 300
                 LLQPAHGPAHPVGGLAPPPHEVRQGRPPQRE                       
Sbjct: 241 PPHGVGLLQPAHGPAHPVGGLAPPPHEVRQGRPPQREHLLGDHHGVHHLRLPPHRWHQHR 300

Query: 301 XXXXXXXXXXXXXXXXXQPQAEAXXXXXXXXXRLQPVRSHHRLLPAALRPQEGHXXXXXX 360
                            QPQAEA         RLQPVRSHHRLLPAALRPQEGH      
Sbjct: 301 PRRPHRRHALPLRRGLRQPQAEAGGDVDGGGGRLQPVRSHHRLLPAALRPQEGHRREARR 360

Query: 361 XXXXXXXXSHAGLNFGRGGHRCMGFVLDSLTXXXXXXSCLIAK 403
                   SHAGLNFGRGGHRCMGFVLDSLT      SCLIAK
Sbjct: 361 LTRPARIRSHAGLNFGRGGHRCMGFVLDSLTFFFFFFSCLIAK 403



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,266,160
Number of extensions: 339220
Number of successful extensions: 972
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 3
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)