BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0654200 Os01g0654200|AK100750
         (331 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0654200  Peptidase M50 family protein                        659   0.0  

>Os01g0654200 Peptidase M50 family protein
          Length = 331

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/319 (100%), Positives = 319/319 (100%)

Query: 13  FVTGGLMITGVPEASPLSGYLSAHNFILSVDGLNITRADEWMKMLTQDNVVQISSRDLLE 72
           FVTGGLMITGVPEASPLSGYLSAHNFILSVDGLNITRADEWMKMLTQDNVVQISSRDLLE
Sbjct: 13  FVTGGLMITGVPEASPLSGYLSAHNFILSVDGLNITRADEWMKMLTQDNVVQISSRDLLE 72

Query: 73  GSEGYRATGSRKGYCVPNSWMDASKNLWQINDKLSCPDDLVAFQRMSEKGIGKKEVEDKY 132
           GSEGYRATGSRKGYCVPNSWMDASKNLWQINDKLSCPDDLVAFQRMSEKGIGKKEVEDKY
Sbjct: 73  GSEGYRATGSRKGYCVPNSWMDASKNLWQINDKLSCPDDLVAFQRMSEKGIGKKEVEDKY 132

Query: 133 CLIAKDVVKLKKCGNGWRGAEDGRSNFACLEDEYCLVPVLGPGISWIEISYARPYSLECL 192
           CLIAKDVVKLKKCGNGWRGAEDGRSNFACLEDEYCLVPVLGPGISWIEISYARPYSLECL
Sbjct: 133 CLIAKDVVKLKKCGNGWRGAEDGRSNFACLEDEYCLVPVLGPGISWIEISYARPYSLECL 192

Query: 193 QKERNSSLLHDGNNNPGLGPCQGTFVYAGDLLSAAHSIKLSSYRPRWPLLLFIADVPRIL 252
           QKERNSSLLHDGNNNPGLGPCQGTFVYAGDLLSAAHSIKLSSYRPRWPLLLFIADVPRIL
Sbjct: 193 QKERNSSLLHDGNNNPGLGPCQGTFVYAGDLLSAAHSIKLSSYRPRWPLLLFIADVPRIL 252

Query: 253 QDGLSCLFRVSAALAVVNCLPVYFLDGEAILETMLSYFSWFTRRQQRNILKVCRFLWTIL 312
           QDGLSCLFRVSAALAVVNCLPVYFLDGEAILETMLSYFSWFTRRQQRNILKVCRFLWTIL
Sbjct: 253 QDGLSCLFRVSAALAVVNCLPVYFLDGEAILETMLSYFSWFTRRQQRNILKVCRFLWTIL 312

Query: 313 SIVLFSRTLYSMTLYYGFV 331
           SIVLFSRTLYSMTLYYGFV
Sbjct: 313 SIVLFSRTLYSMTLYYGFV 331



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,480,276
Number of extensions: 494787
Number of successful extensions: 1143
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)