BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0147200 Os01g0147200|AK121921
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0147200 IWS1, C-terminal family protein 750 0.0
>Os01g0147200 IWS1, C-terminal family protein
Length = 533
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/533 (74%), Positives = 396/533 (74%)
Query: 1 MDDPYIDEDGEPLMDPYDTRDPSPEPQQQPYXXXXXXXXXXWNRGRSPTPVHGDDGAGXX 60
MDDPYIDEDGEPLMDPYDTRDPSPEPQQQPY WNRGRSPTPVHGDDGAG
Sbjct: 1 MDDPYIDEDGEPLMDPYDTRDPSPEPQQQPYDDLEDDLGDDWNRGRSPTPVHGDDGAGSS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXMPSDGLDDWGEEAAGLXXXXXXXXXXXXKKRKGSSALR 120
MPSDGLDDWGEEAAGL KKRKGSSALR
Sbjct: 61 SKPRKRLLKKGGGGGGGGGGHGMPSDGLDDWGEEAAGLADDDVDPEADAAKKRKGSSALR 120
Query: 121 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQDEGER 180
DL DQDEGER
Sbjct: 121 DLARGGGKEKKEKKRRKEDGREREGGRGMGMAREKRGGSGGKGFGGGGGGGHGDQDEGER 180
Query: 181 EIQELWDTIAGGDSEDDQEGVRTLDDDNFIDDTGVDPADRYGSDNDGHSPRHYPQAXXXX 240
EIQELWDTIAGGDSEDDQEGVRTLDDDNFIDDTGVDPADRYGSDNDGHSPRHYPQA
Sbjct: 181 EIQELWDTIAGGDSEDDQEGVRTLDDDNFIDDTGVDPADRYGSDNDGHSPRHYPQAEEGE 240
Query: 241 XXXXXXRLFXXXXXXXXNDRPRADIGLIVEQFIAEFEVAAEEDANLNRQSKPAINKLMKL 300
RLF NDRPRADIGLIVEQFIAEFEVAAEEDANLNRQSKPAINKLMKL
Sbjct: 241 EDDEIERLFKGGKKKKKNDRPRADIGLIVEQFIAEFEVAAEEDANLNRQSKPAINKLMKL 300
Query: 301 PLLIDVLSKKNLQQEFLDHGVLTLLKNWLEPLPDGSLPNMNIRTAVLKLLTDFPIDLEQY 360
PLLIDVLSKKNLQQEFLDHGVLTLLKNWLEPLPDGSLPNMNIRTAVLKLLTDFPIDLEQY
Sbjct: 301 PLLIDVLSKKNLQQEFLDHGVLTLLKNWLEPLPDGSLPNMNIRTAVLKLLTDFPIDLEQY 360
Query: 361 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDER 420
DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDER
Sbjct: 361 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDER 420
Query: 421 APYRRPQMKKPXXXXXGMESRDDDLDADFSQRKSGQGGARQHASRPEASPLDFVIRPQSK 480
APYRRPQMKKP GMESRDDDLDADFSQRKSGQGGARQHASRPEASPLDFVIRPQSK
Sbjct: 421 APYRRPQMKKPSSSSSGMESRDDDLDADFSQRKSGQGGARQHASRPEASPLDFVIRPQSK 480
Query: 481 IDPEQIRARAKQVVQDQRRLKMXXXXXXXXXXXXXXXXXSKLSVEGRGMIKYL 533
IDPEQIRARAKQVVQDQRRLKM SKLSVEGRGMIKYL
Sbjct: 481 IDPEQIRARAKQVVQDQRRLKMNKKLQQLKAPKKKNLQASKLSVEGRGMIKYL 533
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,386,402
Number of extensions: 625306
Number of successful extensions: 1658
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1656
Number of HSP's successfully gapped: 2
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)