BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0138800 Os01g0138800|AK106157
         (431 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0138800  Peptidase C26 domain containing protein             793   0.0  

>Os01g0138800 Peptidase C26 domain containing protein
          Length = 431

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/431 (90%), Positives = 391/431 (90%)

Query: 1   MSPSPDLARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLD 60
           MSPSPDLARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLD
Sbjct: 1   MSPSPDLARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLD 60

Query: 61  SFEPIHGVLLCEGEDVDPXXXXXXXXXXXXXXXEQLDAVRSLHPSDAAIDHEKDSIELRL 120
           SFEPIHGVLLCEGEDVDP               EQLDAVRSLHPSDAAIDHEKDSIELRL
Sbjct: 61  SFEPIHGVLLCEGEDVDPSLYGGGGAGSGGLSAEQLDAVRSLHPSDAAIDHEKDSIELRL 120

Query: 121 ARRCLERNIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAAAVRHINYDNYDGHRHPVR 180
           ARRCLERNIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAAAVRHINYDNYDGHRHPVR
Sbjct: 121 ARRCLERNIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAAAVRHINYDNYDGHRHPVR 180

Query: 181 VLPGTPLHEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYN 240
           VLPGTPLHEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYN
Sbjct: 181 VLPGTPLHEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYN 240

Query: 241 PGEGKFIMGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKLXXXXXXMPASPK 300
           PGEGKFIMGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKL      MPASPK
Sbjct: 241 PGEGKFIMGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKLAAAAAAMPASPK 300

Query: 301 LNQEMEKQRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQE 360
           LNQEMEKQRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQE
Sbjct: 301 LNQEMEKQRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQE 360

Query: 361 KRLKQMGATVRNASGYINXXXXXXXXXXXXXXXXXXXSIDQLSDLASFYHIMGTICSEVL 420
           KRLKQMGATVRNASGYIN                   SIDQLSDLASFYHIMGTICSEVL
Sbjct: 361 KRLKQMGATVRNASGYINRLKLNEEREAAARALMAKMSIDQLSDLASFYHIMGTICSEVL 420

Query: 421 DRKLHSAAPAP 431
           DRKLHSAAPAP
Sbjct: 421 DRKLHSAAPAP 431



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,147,365
Number of extensions: 598602
Number of successful extensions: 1191
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1190
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)